genome.fa.s9034.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009034.1 Corchorus capsularis cultivar CVL-1 contig09055, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  38936

Tables:   1   

This is table  1  of  1  ( 31 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
67--91	13	1.9	13	100	0	50	48	20	0	32	1.50
646--889	124	2.0	119	92	4	398	39	13	10	36	1.80
886--913	2	14.0	2	100	0	56	50	0	0	50	1.00
3020--3360	123	2.7	122	85	5	432	29	27	28	14	1.95
3472--3667	21	9.4	21	69	9	96	44	18	21	14	1.85
3519--3655	42	3.3	41	71	11	111	43	21	20	13	1.86
3686--3804	21	5.7	22	72	21	60	44	18	23	13	1.85
3716--3804	21	4.3	21	72	23	62	44	19	20	15	1.86
3770--3998	88	2.6	88	85	4	320	42	17	20	19	1.90
3812--3957	46	3.3	46	66	14	124	43	17	20	18	1.89
3457--3980	237	2.2	233	81	12	581	43	18	20	16	1.88
4028--4497	98	4.8	97	86	2	591	34	23	30	12	1.92
4048--4497	196	2.3	197	90	1	697	34	23	30	12	1.92
4513--4558	24	1.9	24	86	8	67	30	28	26	15	1.96
4972--5241	95	2.8	96	89	2	427	42	20	20	17	1.90
10180--10303	45	2.8	44	81	2	140	39	24	21	14	1.91
11171--11241	37	1.9	37	94	0	124	32	29	19	18	1.96
11326--11376	26	2.0	26	96	0	93	27	41	13	17	1.87
11333--11374	13	3.3	12	76	23	50	26	40	16	16	1.90
11984--12009	2	13.0	2	100	0	52	50	0	0	50	1.00
13624--13664	16	2.6	16	88	0	55	9	9	21	58	1.59
13730--13770	15	2.8	15	85	14	59	0	17	43	39	1.49
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
15505--15672	31	5.5	31	64	20	104	36	20	16	26	1.94
15509--15669	60	2.7	59	89	1	232	37	19	17	25	1.94
15700--15838	31	4.6	30	78	10	140	25	19	19	35	1.95
18849--18920	29	2.4	29	81	2	81	38	26	11	23	1.88
19393--19439	22	2.1	22	96	0	85	44	8	14	31	1.76
23513--23585	28	2.6	28	86	6	103	21	24	20	32	1.97
28201--28246	23	2.0	23	100	0	92	26	0	8	65	1.21
30928--30952	2	12.5	2	100	0	50	48	0	0	52	1.00
34964--35055	42	2.2	42	86	0	130	26	21	11	40	1.88

Tables:   1

The End!