genome.fa.s9038.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009038.1 Corchorus capsularis cultivar CVL-1 contig09059, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  95496

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
3491--3559	35	2.0	35	94	0	120	21	20	4	53	1.62
3514--3580	20	3.2	20	74	4	53	17	22	2	56	1.54
3514--3601	42	2.1	41	83	8	106	19	22	3	54	1.59
3749--3951	53	3.8	53	88	6	320	15	19	7	57	1.62
3749--3951	27	7.6	27	87	10	269	15	19	7	57	1.62
3750--3951	107	1.9	106	91	5	336	15	18	7	57	1.61
3778--4011	107	2.2	107	82	6	251	18	18	7	55	1.65
3958--4119	55	2.9	56	91	3	258	25	17	8	49	1.73
9991--10043	21	2.6	21	87	3	72	28	32	32	7	1.85
11666--11906	41	5.6	43	75	11	151	39	20	27	12	1.89
11700--12211	40	11.8	43	73	12	216	38	19	25	15	1.92
11698--11869	46	3.8	46	78	9	160	42	20	26	11	1.85
11802--12214	40	9.8	39	75	14	308	36	20	25	16	1.94
11666--12187	134	4.0	127	76	8	315	38	19	26	15	1.92
12768--13060	102	2.9	97	72	15	243	33	17	6	42	1.74
12677--13092	50	8.3	49	74	11	222	35	16	5	42	1.72
13057--13156	51	2.0	50	92	2	164	41	18	1	40	1.57
22276--22325	21	2.4	21	86	0	73	58	2	36	4	1.29
27966--28014	21	2.3	21	82	6	55	42	16	26	14	1.86
36601--36625	10	2.5	10	100	0	50	48	20	8	24	1.76
37925--37999	37	2.0	37	82	5	89	30	12	6	50	1.65
43637--43661	10	2.5	10	100	0	50	48	20	8	24	1.76
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45183--45245	30	2.1	30	85	5	83	33	14	31	20	1.92
49670--49778	55	2.0	54	80	5	121	39	5	14	40	1.69
50047--50861	71	11.4	71	79	11	778	39	10	18	31	1.84
50066--50861	36	22.3	36	81	8	849	39	10	18	31	1.84
50047--50861	107	7.6	106	81	7	843	39	10	18	31	1.84
52270--52341	31	2.3	31	90	4	110	15	23	15	45	1.84
53390--53438	23	2.1	24	84	3	64	79	4	10	6	1.03
53494--53544	14	3.8	13	84	7	66	41	7	11	39	1.71
54255--54292	13	2.8	14	88	4	51	78	0	18	2	0.86
55380--55475	35	2.7	35	91	0	147	15	21	22	39	1.91
55711--55952	107	2.2	107	80	5	263	17	17	27	37	1.92
58567--58605	3	13.3	3	83	5	53	61	0	38	0	0.96
58875--59008	50	2.6	50	83	10	162	44	5	12	37	1.65
58920--59028	55	2.0	54	82	5	130	42	5	11	40	1.65
59316--60108	36	22.3	36	81	8	833	40	9	18	32	1.82
59297--60026	107	6.8	106	82	8	811	40	9	17	32	1.82
59297--60094	214	3.7	213	86	5	933	40	9	18	32	1.82
59649--59707	19	3.2	19	71	9	59	40	8	20	30	1.82
74324--74364	14	3.1	14	83	10	52	21	39	21	17	1.93
85100--85204	33	3.2	33	78	5	113	24	9	21	43	1.82
85153--85240	33	2.7	32	84	8	106	28	9	21	40	1.84
85230--85338	33	3.3	33	94	0	191	27	11	17	44	1.82
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
85187--85338	66	2.3	66	81	2	171	30	10	17	40	1.84
87763--87822	21	2.9	21	76	0	75	35	11	21	31	1.90
89337--89372	19	1.9	18	88	5	54	41	2	22	33	1.68
90654--90687	16	2.2	16	89	5	52	29	2	8	58	1.43
93274--93321	14	3.4	14	77	8	53	4	27	0	68	1.07
95466--95491	2	13.0	2	100	0	52	50	0	0	50	1.00

Tables:   1

The End!