Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009043.1 Corchorus capsularis cultivar CVL-1 contig09064, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12555

Tables:   1   

This is table  1  of  1  ( 16 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2289--2364
27
2.8
27
77
2
71
43
25
14
17
1.86
2585--3114
63
8.5
63
80
9
468
40
15
20
24
1.90
2729--3112
127
3.0
126
84
4
506
41
14
19
23
1.89
2604--3114
190
2.7
189
82
7
555
40
15
20
23
1.90
3007--3043
17
2.1
18
95
5
67
45
5
21
27
1.73
3438--3646
114
1.8
114
83
8
282
45
13
11
29
1.78
3447--3649
38
5.3
38
78
10
209
46
13
11
28
1.77
3446--3649
76
2.7
77
90
3
306
46
13
11
28
1.78
3448--3680
76
3.1
74
75
13
181
47
12
10
29
1.76
4087--4270
36
5.2
36
73
15
152
38
23
17
19
1.93
4277--4749
70
7.1
60
71
21
291
36
23
18
20
1.95
4334--4749
70
6.0
70
87
1
557
37
23
18
20
1.94
4745--4924
35
5.1
35
81
4
229
41
23
20
15
1.90
5711--5743
16
2.1
16
94
0
57
6
9
0
84
0.76
5981--6018
19
2.0
20
94
5
69
0
15
0
84
0.63
9739--9808
36
2.0
36
94
5
126
30
14
14
41
1.85

Tables:   1

The End!