Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009045.1 Corchorus capsularis cultivar CVL-1 contig09066, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2887
ACGTcount: A:0.28, C:0.13, G:0.17, T:0.42


Found at i:1073 original size:19 final size:18

Alignment explanation


    Indices: 1034--1069  Score: 72
    Period size: 18  Copynumber: 2.0  Consensus size: 18

       1024 TAAAAATGTT

                              
       1034 TTTTGAAAATTTTTTGGA
          1 TTTTGAAAATTTTTTGGA

                              
       1052 TTTTGAAAATTTTTTGGA
          1 TTTTGAAAATTTTTTGGA

       1070 ATTTCATAGG


Statistics
Matches: 18,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  18   18  1.00

ACGTcount: A:0.28, C:0.00, G:0.17, T:0.56


Consensus pattern (18 bp):   
TTTTGAAAATTTTTTGGA
Done.