Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009047.1 Corchorus capsularis cultivar CVL-1 contig09068, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 763

Length: 1273
ACGTcount: A:0.37, C:0.13, G:0.10, T:0.40


Found at i:59 original size:28 final size:28

Alignment explanation


    Indices: 19--75  Score: 105
    Period size: 28  Copynumber: 2.0  Consensus size: 28

          9 CTACCATCCC

                           *            
         19 ACCTCCCCCCATTGTGAAATAAAACGAA
          1 ACCTCCCCCCATTGTAAAATAAAACGAA

                                        
         47 ACCTCCCCCCATTGTAAAATAAAACGAA
          1 ACCTCCCCCCATTGTAAAATAAAACGAA

             
         75 A
          1 A

         76 GAGAGATTGA


Statistics
Matches: 28,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  28   28  1.00

ACGTcount: A:0.42, C:0.32, G:0.09, T:0.18


Consensus pattern (28 bp):   
ACCTCCCCCCATTGTAAAATAAAACGAA
Done.