Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009049.1 Corchorus capsularis cultivar CVL-1 contig09070, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86233

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
211--282
31
2.3
31
75
13
76
23
5
11
59
1.52
744--803
16
3.8
16
78
8
59
35
40
15
10
1.80
731--819
32
2.8
32
87
0
115
38
35
15
10
1.81
4548--4595
26
1.9
23
84
16
60
68
12
4
14
1.34
13898--13957
30
2.0
30
100
0
120
33
20
30
16
1.94
17649--17703
25
2.2
26
90
3
85
29
12
36
21
1.91
20277--20344
34
2.0
34
88
0
100
29
14
29
26
1.95
23327--23358
2
16.0
2
100
0
64
0
50
0
50
1.00
24123--24200
29
2.6
31
78
13
85
50
14
8
26
1.72
30235--30506
115
2.4
114
81
5
318
22
21
19
37
1.95
39672--39762
2
48.0
2
73
10
75
46
1
3
49
1.25
39664--39768
24
4.5
25
73
15
91
45
2
2
48
1.32
41025--41086
30
2.0
31
87
9
90
32
12
35
19
1.90
42388--42418
15
2.1
15
93
0
53
38
6
25
29
1.81
50559--50590
2
16.0
2
93
0
55
46
0
0
53
1.00
51116--51158
20
2.2
20
91
0
68
46
0
39
13
1.44
51854--51893
18
2.2
18
86
4
53
45
5
20
30
1.72
56410--56446
19
2.0
18
89
5
56
29
21
8
40
1.82
59223--59261
3
13.0
3
100
0
78
33
0
0
66
0.92
62540--62583
1
44.0
1
100
0
88
100
0
0
0
0.00
70048--70082
11
3.2
11
83
0
52
77
17
5
0
0.96
69756--70455
357
2.0
352
85
4
962
39
14
13
33
1.84
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
71406--71465
30
2.0
30
96
0
111
18
26
21
33
1.96
74244--74273
3
10.0
3
100
0
60
66
0
0
33
0.92
75423--75459
2
18.5
2
94
0
65
45
0
2
51
1.15
80783--80823
16
2.6
16
92
3
66
0
2
12
85
0.70
80783--80824
8
5.4
8
81
13
52
0
2
11
85
0.68
80783--80814
7
4.4
7
92
7
55
0
3
12
84
0.74

Tables:   1

The End!