Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009056.1 Corchorus capsularis cultivar CVL-1 contig09077, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41933

Tables:   1   

This is table  1  of  1  ( 40 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
276--427
70
2.2
70
89
2
225
50
0
11
36
1.44
537--600
17
3.9
17
79
18
73
73
0
1
25
0.92
539--604
13
5.2
13
71
16
50
71
0
1
27
0.95
536--605
30
2.4
29
80
4
79
71
0
1
27
0.94
1877--1924
2
23.0
2
91
8
78
47
2
2
47
1.25
6425--6462
11
3.5
11
89
10
51
39
0
2
57
1.12
10746--10924
96
1.9
96
89
2
281
33
7
5
53
1.52
10848--10913
27
2.4
26
87
7
87
42
4
4
48
1.44
11018--12132
331
3.4
328
83
5
1362
31
15
16
36
1.90
21130--21204
32
2.3
33
84
6
100
29
37
22
10
1.88
21158--21203
16
2.9
16
81
12
58
30
39
19
10
1.86
21167--21226
23
2.5
23
94
5
102
30
40
20
10
1.85
21160--21244
39
2.2
40
79
14
97
32
38
20
8
1.82
21206--21244
16
2.5
15
80
12
51
38
38
15
7
1.76
21408--21448
21
2.0
21
85
9
57
2
7
9
80
0.99
22852--22887
13
2.8
13
95
0
63
25
8
44
22
1.80
25683--25730
16
2.9
16
76
11
51
22
25
0
52
1.48
25710--25756
24
1.9
25
86
4
69
19
19
2
59
1.48
25860--25903
21
2.0
22
86
4
63
20
22
4
52
1.65
25872--26168
21
14.9
21
66
18
143
21
20
6
50
1.71
25923--26111
35
5.1
35
76
13
164
21
19
7
51
1.71
25925--26065
71
2.0
71
85
2
194
21
20
8
48
1.76
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
26039--26168
22
6.0
23
78
9
87
21
21
5
51
1.67
26145--26290
51
2.8
50
79
14
127
19
20
3
56
1.57
26206--26255
21
2.3
21
86
3
73
18
20
4
58
1.55
26230--26308
35
2.3
35
91
4
124
17
24
3
54
1.59
26355--26467
40
3.1
39
71
24
118
25
16
7
50
1.70
30429--30520
27
3.4
27
80
4
96
44
23
14
17
1.85
33141--33165
12
2.1
12
100
0
50
28
16
16
40
1.89
37783--37823
16
2.5
17
84
8
57
29
46
12
12
1.77
37882--37992
16
6.9
16
77
8
118
34
36
19
9
1.84
37858--37995
32
4.3
32
84
7
149
32
37
21
7
1.83
37858--37981
48
2.6
48
82
7
128
31
38
21
8
1.83
37882--37992
48
2.3
48
81
9
136
34
36
19
9
1.84
38101--38148
21
2.3
21
81
0
60
29
6
4
60
1.40
38600--38679
16
5.0
16
86
6
108
35
36
21
7
1.82
39258--39297
20
2.0
20
85
5
53
12
27
22
37
1.90
39713--39767
25
2.1
26
83
16
69
63
1
1
32
1.15
39713--39764
13
4.1
12
82
9
59
63
1
1
32
1.16
39720--39779
27
2.3
25
80
5
66
71
1
1
25
1.04

Tables:   1

The End!