Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009059.1 Corchorus capsularis cultivar CVL-1 contig09080, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30758

Tables:   1   

This is table  1  of  1  ( 11 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1621--1664
2
21.5
2
90
4
70
47
0
2
50
1.13
1810--1855
24
1.9
24
86
0
65
58
4
8
28
1.47
4752--4782
12
2.5
12
94
5
53
16
32
16
35
1.91
5704--6414
301
2.4
301
80
7
777
38
16
13
32
1.87
6669--8007
329
4.1
327
81
5
1304
36
15
14
34
1.88
8120--8661
288
1.9
287
85
2
746
36
15
13
34
1.87
9713--9747
17
2.1
17
100
0
70
17
17
11
54
1.71
10942--10971
15
1.9
16
93
6
53
53
3
0
43
1.17
15384--15411
2
14.0
2
100
0
56
50
0
0
50
1.00
29339--29363
10
2.5
10
100
0
50
56
8
8
28
1.57
29607--30727
327
3.4
321
81
6
1155
38
15
13
32
1.86

Tables:   1

The End!