Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009060.1 Corchorus capsularis cultivar CVL-1 contig09081, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26770

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7--46
2
20.0
2
100
0
80
50
0
0
50
1.00
267--293
14
1.9
14
100
0
54
40
0
0
59
0.98
627--2822
655
3.4
651
80
8
2336
33
14
16
35
1.89
453--2822
321
7.3
321
79
9
2060
34
14
16
35
1.89
490--3067
974
2.7
962
81
7
2736
33
14
16
35
1.89
659--3070
655
3.7
645
77
10
2275
33
14
16
35
1.89
5253--5277
12
2.1
12
100
0
50
40
20
16
24
1.91
6141--6174
17
2.0
17
94
0
59
23
14
14
47
1.82
6329--6358
2
15.0
2
100
0
60
50
0
0
50
1.00
10105--10154
6
8.8
6
85
12
61
82
14
4
0
0.82
10108--10151
11
4.1
10
82
8
52
84
11
4
0
0.77
10108--10151
22
2.0
21
86
4
61
84
11
4
0
0.77
10105--10154
17
2.9
17
82
5
57
82
14
4
0
0.82
14901--14936
2
18.0
2
100
0
72
50
0
0
50
1.00
26308--26336
2
14.5
2
100
0
58
51
0
0
48
1.00

Tables:   1

The End!