Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009061.1 Corchorus capsularis cultivar CVL-1 contig09082, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41808

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
652--683
16
2.0
16
100
0
64
31
18
18
31
1.95
6395--6419
2
12.5
2
100
0
50
48
0
0
52
1.00
10290--10402
31
3.9
31
71
15
105
34
23
24
16
1.95
11219--11252
2
17.0
2
93
0
59
47
0
2
50
1.16
13129--13158
2
15.0
2
100
0
60
50
0
0
50
1.00
20458--20528
29
2.4
29
83
0
88
39
26
11
22
1.88
21095--21160
31
2.1
32
88
2
98
25
16
6
51
1.67
21439--21477
19
2.0
20
85
14
55
33
2
2
61
1.23
21670--21809
22
6.3
22
75
9
113
32
10
20
37
1.85
21845--21903
22
2.7
22
79
10
66
37
10
16
35
1.83
21999--22076
25
3.5
22
82
8
79
41
10
15
33
1.81
21922--22509
44
13.2
44
65
18
179
40
10
15
34
1.81
22058--22203
66
2.2
65
79
6
150
40
9
15
34
1.79
21980--22203
22
10.3
22
70
11
131
40
10
15
33
1.81
22311--22358
19
2.5
19
93
3
78
47
10
14
27
1.76
22311--22772
22
21.4
22
69
17
134
39
10
14
35
1.81
22517--22596
23
3.5
23
89
1
108
42
6
11
40
1.66
22515--22642
45
2.8
45
81
5
136
40
9
12
37
1.75
22997--23023
2
13.5
2
100
0
54
48
0
0
51
1.00
27005--27040
2
18.0
2
100
0
72
50
0
0
50
1.00
29424--29456
6
5.5
6
100
0
66
36
30
0
33
1.58
35758--35815
29
2.0
29
96
0
107
32
17
15
34
1.91
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
36155--36222
31
2.2
32
89
2
102
38
10
11
39
1.76
37669--37738
36
1.9
36
94
0
122
31
8
2
57
1.44
40052--40087
3
12.0
3
100
0
72
66
0
0
33
0.92

Tables:   1

The End!