Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009062.1 Corchorus capsularis cultivar CVL-1 contig09083, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 17835
ACGTcount: A:0.29, C:0.17, G:0.18, T:0.36


Found at i:16391 original size:53 final size:52

Alignment explanation


    Indices: 16312--16415  Score: 163
    Period size: 53  Copynumber: 2.0  Consensus size: 52

      16302 GGCGATCTTT

                         *                      *    *          
      16312 GATCACCTGTGGTGATCTTGGGTGGTGATCTCAGATCACCCTGTTTAGTTAG
          1 GATCACCTGTGGTAATCTTGGGTGGTGATCTCAGATAACCCCGTTTAGTTAG

                                                           *    
      16364 GATCACCTGTTGGTAATCTTGGGTGGTGATCTCAGATAACCCCGTTTGGTTA
          1 GATCACCTG-TGGTAATCTTGGGTGGTGATCTCAGATAACCCCGTTTAGTTA

      16416 CACATTTTTT


Statistics
Matches: 47,  Mismatches: 4, Indels: 1
        0.90            0.08        0.02

Matches are distributed among these distances:
  52    9  0.19
  53   38  0.81

ACGTcount: A:0.18, C:0.19, G:0.28, T:0.35


Consensus pattern (52 bp):   
GATCACCTGTGGTAATCTTGGGTGGTGATCTCAGATAACCCCGTTTAGTTAG
Done.