Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009064.1 Corchorus capsularis cultivar CVL-1 contig09085, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20542

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1950--2054
33
3.2
32
85
5
122
8
29
39
22
1.84
7522--7555
8
4.1
8
85
7
50
23
2
14
58
1.50
8521--8627
33
3.2
32
85
5
126
8
28
39
23
1.84
11195--11234
21
1.9
21
94
0
71
55
5
22
17
1.61
11249--11283
15
2.4
14
90
9
61
51
5
22
20
1.68
11318--11545
22
10.5
21
75
12
176
53
2
20
23
1.57
11410--11461
20
2.6
21
84
6
63
48
5
21
25
1.72
11561--11585
7
3.6
7
100
0
50
56
0
28
16
1.41
11316--11588
151
1.8
151
79
9
324
54
3
20
21
1.59
11536--11671
14
9.6
14
65
18
59
55
7
21
15
1.64
11637--12006
34
11.1
34
69
17
233
54
5
24
15
1.62
11637--11940
46
6.8
46
67
17
153
54
5
24
15
1.61
11537--11929
105
3.7
105
80
9
426
55
6
22
15
1.63
11766--11909
7
21.6
7
69
17
58
56
2
24
16
1.54
11896--12019
34
3.6
34
75
11
119
51
4
25
17
1.65

Tables:   1

The End!