Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009065.1 Corchorus capsularis cultivar CVL-1 contig09086, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41248

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2478--2593
42
2.8
42
85
2
153
7
29
37
25
1.84
4430--4512
33
2.6
31
88
5
123
43
20
8
27
1.81
4430--4509
30
2.6
30
90
6
115
43
20
8
27
1.81
6015--6044
11
2.6
11
94
5
51
13
0
0
86
0.57
6016--6044
12
2.3
13
94
5
51
10
0
0
89
0.48
7060--7175
42
2.8
42
82
2
144
7
28
37
25
1.84
8821--8874
28
1.9
28
85
7
74
29
25
27
16
1.97
13613--13837
111
2.0
111
94
0
396
50
24
4
20
1.67
14976--15113
65
2.1
66
94
2
244
42
18
16
22
1.89
17674--17877
102
2.0
102
99
0
399
31
19
17
31
1.95
20434--20793
84
4.4
83
84
5
441
20
10
17
51
1.75
20427--20793
166
2.2
162
82
6
438
20
10
17
51
1.74
22674--22756
34
2.5
33
86
5
114
34
3
12
49
1.57
22693--22757
34
1.9
34
96
0
121
35
4
9
50
1.55
34822--34923
33
3.1
33
80
6
102
22
39
26
11
1.88
34845--34952
33
3.3
33
84
2
128
24
38
25
12
1.89
38473--38576
33
3.2
33
86
4
142
43
19
10
26
1.83
38603--38699
33
2.9
33
85
0
122
43
20
10
25
1.83

Tables:   1

The End!