Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009068.1 Corchorus capsularis cultivar CVL-1 contig09089, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3856
ACGTcount: A:0.30, C:0.16, G:0.24, T:0.31


Found at i:3767 original size:33 final size:32

Alignment explanation


    Indices: 3688--3795  Score: 126
    Period size: 33  Copynumber: 3.3  Consensus size: 32

       3678 AGCATAAGTG

                          *               *  
       3688 ACCGGCCACGCGACTTGGAGATGCCCGCGCAAC
          1 ACCGGCCACGCGACATGGAGATGCCCG-GCCAC

              *     *                        
       3721 ACTGGCCATGCGACATGGAGATGCCCGGCCATC
          1 ACCGGCCACGCGACATGGAGATGCCCGGCCA-C

                *             **            
       3754 ACCGACCACGCGACATGGCCATGCCCGGCCAC
          1 ACCGGCCACGCGACATGGAGATGCCCGGCCAC

                      
       3786 ACCCGGCCAC
          1 A-CCGGCCAC

       3796 ATGACTCGGC


Statistics
Matches: 63,  Mismatches: 10, Indels: 4
        0.82            0.13        0.05

Matches are distributed among these distances:
  32    5  0.08
  33   58  0.92

ACGTcount: A:0.21, C:0.42, G:0.28, T:0.09


Consensus pattern (32 bp):   
ACCGGCCACGCGACATGGAGATGCCCGGCCAC
Done.