Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01009070.1 Corchorus capsularis cultivar CVL-1 contig09091, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 5486
ACGTcount: A:0.35, C:0.18, G:0.18, T:0.29
Found at i:1272 original size:33 final size:33
Alignment explanation
Indices: 1230--1307 Score: 111
Period size: 33 Copynumber: 2.4 Consensus size: 33
1220 CTCTTTCTTT
**
1230 TCAACCAAAACAGTCCTATGTTCAATGCTATGA
1 TCAACCAAAACAGAACTATGTTCAATGCTATGA
* * *
1263 TCAACCAAAACAGAATTATTTTCCATGCTATGA
1 TCAACCAAAACAGAACTATGTTCAATGCTATGA
1296 TCAACCAAAACA
1 TCAACCAAAACA
1308 AAATTATTTT
Statistics
Matches: 40, Mismatches: 5, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
33 40 1.00
ACGTcount: A:0.41, C:0.24, G:0.09, T:0.26
Consensus pattern (33 bp):
TCAACCAAAACAGAACTATGTTCAATGCTATGA
Found at i:1313 original size:33 final size:33
Alignment explanation
Indices: 1254--1318 Score: 121
Period size: 33 Copynumber: 2.0 Consensus size: 33
1244 CCTATGTTCA
*
1254 ATGCTATGATCAACCAAAACAGAATTATTTTCC
1 ATGCTATGATCAACCAAAACAAAATTATTTTCC
1287 ATGCTATGATCAACCAAAACAAAATTATTTTC
1 ATGCTATGATCAACCAAAACAAAATTATTTTC
1319 ATCACAAGTA
Statistics
Matches: 31, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
33 31 1.00
ACGTcount: A:0.42, C:0.20, G:0.08, T:0.31
Consensus pattern (33 bp):
ATGCTATGATCAACCAAAACAAAATTATTTTCC
Found at i:1371 original size:33 final size:33
Alignment explanation
Indices: 1334--1430 Score: 86
Period size: 33 Copynumber: 2.9 Consensus size: 33
1324 AAGTAGAATC
* * *
1334 CAAAACAGATTTTGTTTCATCACAAACAACACT
1 CAAAAAAGATTTAGTGTCATCACAAACAACACT
** *
1367 CAAAAAAGATTTAGTGTCATTGCCAACAACACT
1 CAAAAAAGATTTAGTGTCATCACAAACAACACT
** * * **
1400 CAAATTAGGTTTAGTATCATTGCAAACAACA
1 CAAAAAAGATTTAGTGTCATCACAAACAACA
1431 TCTAAAACAC
Statistics
Matches: 53, Mismatches: 11, Indels: 0
0.83 0.17 0.00
Matches are distributed among these distances:
33 53 1.00
ACGTcount: A:0.42, C:0.21, G:0.10, T:0.27
Consensus pattern (33 bp):
CAAAAAAGATTTAGTGTCATCACAAACAACACT
Found at i:2363 original size:33 final size:33
Alignment explanation
Indices: 2321--2385 Score: 96
Period size: 33 Copynumber: 2.0 Consensus size: 33
2311 CTCTTTCTTT
*
2321 TCAACCAAAACAG-TCTTATTTTCAATGCTATGA
1 TCAACCAAAACAGAAC-TATTTTCAATGCTATGA
*
2354 TCAACCAAAACAGAACTATTTTCCATGCTATG
1 TCAACCAAAACAGAACTATTTTCAATGCTATG
2386 TGGTGCGCCC
Statistics
Matches: 29, Mismatches: 2, Indels: 2
0.88 0.06 0.06
Matches are distributed among these distances:
33 28 0.97
34 1 0.03
ACGTcount: A:0.37, C:0.23, G:0.09, T:0.31
Consensus pattern (33 bp):
TCAACCAAAACAGAACTATTTTCAATGCTATGA
Found at i:2846 original size:258 final size:258
Alignment explanation
Indices: 2389--2869 Score: 836
Period size: 258 Copynumber: 1.9 Consensus size: 258
2379 TGCTATGTGG
* *
2389 TGCGCCCAAGGCTTATTATGGAAGGAATGATGCGCCAAGGACTTACTATGGACTTGAAGACAAGC
1 TGCGCCCAAGGCTTATCATGGAAGGAATGATGCGCCAAGGACTTACTATAGACTTGAAGACAAGC
* * * *
2454 AAGGAGAGCATGGAAAGGGTGATCAATGGCTGCAAAGAAGCGTGGACAAGCTTAAAGGAGAGAAT
66 AAGGAGAGCATGAAAAGGATGATCAAGGGCTGCAAAGAAGCATGGACAAGCTTAAAGGAGAGAAT
*
2519 GGAATCGCAATTCACCAAGAAGATGCTATTAAGATGCCATTTGATCCTTTGAAGATGCCATTAGG
131 GGAATCGCAATTCACCAAGAAGATGCCATTAAGATGCCATTTGATCCTTTGAAGATGCCATTAGG
2584 TCCGATGACAAGAGCAAGAGCTAAGAGAATTAAGCCCAAACAAAGATAACTAATGATAATTGA
196 TCCGATGACAAGAGCAAGAGCTAAGAGAATTAAGCCCAAACAAAGATAACTAATGATAATTGA
* * *
2647 TGCGCCCAAGGCTTATCATGGAAGGAATTATGCGCCAAGGAGTTATTATAGACTTGAAGACAAGC
1 TGCGCCCAAGGCTTATCATGGAAGGAATGATGCGCCAAGGACTTACTATAGACTTGAAGACAAGC
* * *
2712 ATGGAGAGCATGAAAAGGATGATCAAGGGCTGCAAGGAAGCATGGACAAGCTTAAAGGAGAGGAT
66 AAGGAGAGCATGAAAAGGATGATCAAGGGCTGCAAAGAAGCATGGACAAGCTTAAAGGAGAGAAT
*
2777 GGAATCGTAATTCACCAAGAAGATGCCATTAAGATGCCATTTGATCCTTTGAAGATGCCATTAGG
131 GGAATCGCAATTCACCAAGAAGATGCCATTAAGATGCCATTTGATCCTTTGAAGATGCCATTAGG
2842 TCCGATGACAAGAGCAAGAGCTAAGAGA
196 TCCGATGACAAGAGCAAGAGCTAAGAGA
2870 TTCAAGGATG
Statistics
Matches: 209, Mismatches: 14, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
258 209 1.00
ACGTcount: A:0.37, C:0.16, G:0.27, T:0.20
Consensus pattern (258 bp):
TGCGCCCAAGGCTTATCATGGAAGGAATGATGCGCCAAGGACTTACTATAGACTTGAAGACAAGC
AAGGAGAGCATGAAAAGGATGATCAAGGGCTGCAAAGAAGCATGGACAAGCTTAAAGGAGAGAAT
GGAATCGCAATTCACCAAGAAGATGCCATTAAGATGCCATTTGATCCTTTGAAGATGCCATTAGG
TCCGATGACAAGAGCAAGAGCTAAGAGAATTAAGCCCAAACAAAGATAACTAATGATAATTGA
Found at i:3767 original size:8 final size:8
Alignment explanation
Indices: 3754--3787 Score: 50
Period size: 8 Copynumber: 4.1 Consensus size: 8
3744 ACCTTCTTGA
3754 AAAAATTC
1 AAAAATTC
3762 AAAAATTC
1 AAAAATTC
*
3770 AGAAACTTC
1 A-AAAATTC
3779 AAAAATTC
1 AAAAATTC
3787 A
1 A
3788 TAGCCGATTC
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
8 16 0.70
9 7 0.30
ACGTcount: A:0.59, C:0.15, G:0.03, T:0.24
Consensus pattern (8 bp):
AAAAATTC
Found at i:4091 original size:153 final size:152
Alignment explanation
Indices: 3904--5486 Score: 2146
Period size: 153 Copynumber: 10.4 Consensus size: 152
3894 CAGAAACTAT
* * *
3904 AAAAAGATTATAGTTAGGCCGTAAACAATTGAAAGAATAGCTTTTTGGTTTGCCAAAATCGAAAA
1 AAAATGATTATAGTTAGGCCGTAAACAATTGAAAGAAAAGCTTTTTGGTTTGCC-AAATCGAAGA
3969 CGATTCAAAACAGCACTAATGGGCCCCGAAAGGCCCGAAAAAAAGTGTTCTGAATGAGCTAAAAA
65 CGATTCAAAACAGCACTAATGGGCCCCGAAAGGCCCGAAAAAAAGTGTTCTGAATGAGCTAAAAA
*
4034 CTTCACAATGGACTAATCTCAAC
130 CTTCACAATGGACTAATCTCACC
* * *
4057 AAAATGATTATAGTTAGGTCGTAAACAATTGAAAGAAAAGCTTTGTTGG-TTGCCAAATTGAAGC
1 AAAATGATTATAGTTAGGCCGTAAACAATTGAAAGAAAAGCTTT-TTGGTTTGCCAAATCGAAGA
* * * *
4121 CGATTTAAAACAACACTAATGGG-CCCGGAAGGCCCGAAATAACAAATGTTCTGAATGAGCTAAA
65 CGATTCAAAACAGCACTAATGGGCCCCGAAAGGCCCGAAA-AA-AAGTGTTCTGAATGAGCTAAA
*
4185 AAATTCACAATGGACTAATCTCACC
128 AACTTCACAATGGACTAATCTCACC
* * * * ** *
4210 AAACTGATTATAGTTAGGTCGTAAACAATTGAAATAAAAGTTTTGTTGG-TTGCCAAATTAAAGC
1 AAAATGATTATAGTTAGGCCGTAAACAATTGAAAGAAAAGCTTT-TTGGTTTGCCAAATCGAAGA
* * ** * *
4274 CGATTTAAAATAGCACTAATGGGCCTAGAAAGGCACGAAATAACAAGTGTTCTGAATGAGATAAA
65 CGATTCAAAACAGCACTAATGGGCCCCGAAAGGCCCGAAA-AA-AAGTGTTCTGAATGAGCTAAA
*
4339 AACTTCACAGTGGACTAATCTCACC
128 AACTTCACAATGGACTAATCTCACC
*
4364 AAAATGATTATAGTTAGGCCGTAAACAATTGAAAGAAAAGC-TTTTGGTTTGCCAAATCAAAGAC
1 AAAATGATTATAGTTAGGCCGTAAACAATTGAAAGAAAAGCTTTTTGGTTTGCCAAATCGAAGAC
* *
4428 GATTCAAAACAGCACTAATGGGCGCCGAAAGGCCCGAAAAAAAAGTGTTCTGAATGAGATAAAAA
66 GATTCAAAACAGCACTAATGGGCCCCGAAAGGCCCG-AAAAAAAGTGTTCTGAATGAGCTAAAAA
*
4493 CTTCACAATGAACTAATCTCACC
130 CTTCACAATGGACTAATCTCACC
* *
4516 AAAATGATTATAGTTAGGTCGTAAACAATTGAAAGAAAAGCTTTTTGCTTTGCCAAATCGAAGAC
1 AAAATGATTATAGTTAGGCCGTAAACAATTGAAAGAAAAGCTTTTTGGTTTGCCAAATCGAAGAC
* * * * *
4581 GATTCAAAACAGCCCGAATGGGCTCCGAAAGGCCCGAAAAAAACTGTTCTGAATGAGCGAAAAAC
66 GATTCAAAACAGCACTAATGGGCCCCGAAAGGCCCGAAAAAAAGTGTTCTGAATGAGCTAAAAAC
**
4646 TTCACAATGGACTAATCTCATG
131 TTCACAATGGACTAATCTCACC
* * * *
4668 AAAATAATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCTTTGTGGTTTGCCAAATCGAAGAC
1 AAAATGATTATAGTTAGGCCGTAAACAATTGAAAGAAAAGCTTTTTGGTTTGCCAAATCGAAGAC
* ** *
4733 GATTCAAAACAGCACTAATGGGCCACGAAACTCCCG-AAAAAAGTGTTCTGAATGAGC-GAAAAC
66 GATTCAAAACAGCACTAATGGGCCCCGAAAGGCCCGAAAAAAAGTGTTCTGAATGAGCTAAAAAC
* *
4796 TTCACAATTGACTAATCTCA-T
131 TTCACAATGGACTAATCTCACC
* * * *
4817 AGAAATAATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCTTTGTGGTTT-CC-AATACGAAG
1 A-AAATGATTATAGTTAGGCCGTAAACAATTGAAAGAAAAGCTTTTTGGTTTGCCAAAT-CGAAG
*
4880 ACGATTCAAAACAGCACTAATGGGCCCCGAAAGGCCCGAAATAACAAGTGTTCTGAATGAGTTAA
64 ACGATTCAAAACAGCACTAATGGGCCCCGAAAGGCCCGAAA-AA-AAGTGTTCTGAATGAGCTAA
*
4945 AAACTTCGA-AGTGGACTAATCTCACC
127 AAACTTC-ACAATGGACTAATCTCACC
* * *
4971 AAAATGATTATAGTTAGGCCGTAAACAATTGAAAGGAAAGCTTTGTGCTTTGCCAAATCGAAGAC
1 AAAATGATTATAGTTAGGCCGTAAACAATTGAAAGAAAAGCTTTTTGGTTTGCCAAATCGAAGAC
* *
5036 GATTCAAAACAGCACTAATGGGCCTCGAAAGTCCCGAAAAAAAAGTGTTCTGAATGAGCTAAAAA
66 GATTCAAAACAGCACTAATGGGCCCCGAAAGGCCCG-AAAAAAAGTGTTCTGAATGAGCTAAAAA
* **
5101 CTTCATAATGGACTAATCTCATG
130 CTTCACAATGGACTAATCTCACC
* * * * * * *
5124 AAAATAAGTATAGTTAGGCCATAAACAATGGAAAGAAACGCTTTGTGGTTTGCCAAATCTAAGAC
1 AAAATGATTATAGTTAGGCCGTAAACAATTGAAAGAAAAGCTTTTTGGTTTGCCAAATCGAAGAC
5189 GATTCAAAACAGCACTAATGGGCCCCGAAAGGCCCGAAAAAAAGTGTTCTGAATGAGCTAAAAAC
66 GATTCAAAACAGCACTAATGGGCCCCGAAAGGCCCGAAAAAAAGTGTTCTGAATGAGCTAAAAAC
*
5254 TTCACAATGGACTATTCTCACC
131 TTCACAATGGACTAATCTCACC
* * * * * *
5276 AAAATTATTATAGTTAGGTCGTAAACAATTGTAAGAAAATCTTTGTTGG-TTGCCAAATTGAAGC
1 AAAATGATTATAGTTAGGCCGTAAACAATTGAAAGAAAAGCTTT-TTGGTTTGCCAAATCGAAGA
* * * *
5340 CGATTTAAAACAGCACTACTGGGCCCCGAAAGGCCCGAAATAAAAAGTGTTATGAATGAGTTAAA
65 CGATTCAAAACAGCACTAATGGGCCCCGAAAGGCCCG-AA-AAAAAGTGTTCTGAATGAGCTAAA
* *
5405 AACTTCACAGTAGACTAATCTCACC
128 AACTTCACAATGGACTAATCTCACC
* * * *
5430 GAAATGATAATAGTTAGGCCGTAAAC-ATTGAAAGAAAAGGTTTTTGCTTTGCCAAAT
1 AAAATGATTATAGTTAGGCCGTAAACAATTGAAAGAAAAGCTTTTTGGTTTGCCAAAT
Statistics
Matches: 1279, Mismatches: 128, Indels: 46
0.88 0.09 0.03
Matches are distributed among these distances:
148 3 0.00
149 43 0.03
150 76 0.06
151 37 0.03
152 402 0.31
153 497 0.39
154 215 0.17
155 6 0.00
ACGTcount: A:0.40, C:0.17, G:0.19, T:0.24
Consensus pattern (152 bp):
AAAATGATTATAGTTAGGCCGTAAACAATTGAAAGAAAAGCTTTTTGGTTTGCCAAATCGAAGAC
GATTCAAAACAGCACTAATGGGCCCCGAAAGGCCCGAAAAAAAGTGTTCTGAATGAGCTAAAAAC
TTCACAATGGACTAATCTCACC
Found at i:5160 original size:608 final size:608
Alignment explanation
Indices: 3912--5486 Score: 2279
Period size: 608 Copynumber: 2.6 Consensus size: 608
3902 ATAAAAAGAT
* *
3912 TATAGTTAGGCCGTAAACAATTGAAAGAATAGCTTTTTGGTTTGCCAAAATCGAAAACGATTCAA
1 TATAGTTAGGCCGTAAACAATTGAAAGAAAAGCTTTTTGGTTTGCC-AAATCGAAGACGATTCAA
3977 AACAGCACTAATGGGCCCCGAAAGGCCCGAAAAAAAGTGTTCTGAATGAGCTAAAAACTTCACAA
65 AACAGCACTAATGGGCCCCGAAAGGCCCGAAAAAAAGTGTTCTGAATGAGCTAAAAACTTCACAA
*
4042 TGGACTAATCTCAACAAAATGATTATAGTTAGGTCGTAAACAATTGAAAGAAAAGCTTTGTTGGT
130 TGGACTAATCTCAACAAAATAATTATAGTTAGGTCGTAAACAATTGAAAGAAAAGCTTTGTTGGT
* * *
4107 TGCCAAATTGAAGCCGATTTAAAACAACACTAATGGGCCCGGAAGGCCCGAAATAACAAATGTTC
195 TGCCAAATTGAAGCCGATTTAAAACAGCACTAATGGGCCCGAAAGGCCCGAAA-AA-AAGTGTTC
* * * *
4172 TGAATGAGCTAAAAAATTCACAATGGACTAATCTCACCA-AACTGATTATAGTTAGGTCGTAAAC
258 TGAATGAGC-AAAAACTTCACAATAGACTAATCTCA-CAGAAATGATTATAGTTAGGCCGTAAAC
* * * * * *
4236 AATTGAAATAAAAGTTTTGTTGGTTGCCAAATTAAAGCCGATTTAAAATAGCACTAATGGGCCTA
321 AATTGAAAGAAAAGCTTTGTTGGTTGCCAAATTAAAGACGATTCAAAACAGCACTAATGGGCCCA
4301 GAAAGGCACGAAATAACAAGTGTTCTGAATGAGATAAAAACTTCACAGTGGACTAATCTCACCAA
386 GAAAGGCACGAAATAACAAGTGTTCTGAATGAGATAAAAACTTCACAGTGGACTAATCTCACCAA
*
4366 AATGATTATAGTTAGGCCGTAAACAATTGAAAGAAAAGCTTTTGGTTTGCCAAATCAAAGACGAT
451 AATGATTATAGTTAGGCCGTAAACAATTGAAAGAAAAGCTTTTGCTTTGCCAAATCAAAGACGAT
4431 TCAAAACAGCACTAATGGGCGCCGAAAGGCCCGAAAAAAAAGTGTTCTGAATGAGATAAAAACTT
516 TCAAAACAGCACTAATGGGCGCCGAAAGGCCCGAAAAAAAAGTGTTCTGAATGAGATAAAAACTT
* *
4496 CACAATGAACTAATCTCACCAAAATGAT
581 CACAATGAACTAATCTCACCAAAATAAG
* *
4524 TATAGTTAGGTCGTAAACAATTGAAAGAAAAGCTTTTTGCTTTGCCAAATCGAAGACGATTCAAA
1 TATAGTTAGGCCGTAAACAATTGAAAGAAAAGCTTTTTGGTTTGCCAAATCGAAGACGATTCAAA
* * * * *
4589 ACAGCCCGAATGGGCTCCGAAAGGCCCGAAAAAAACTGTTCTGAATGAGCGAAAAACTTCACAAT
66 ACAGCACTAATGGGCCCCGAAAGGCCCGAAAAAAAGTGTTCTGAATGAGCTAAAAACTTCACAAT
** * * *
4654 GGACTAATCTCATGAAAATAATTATAGTTAGGCCATAAACAATGGAAAGAAAAGCTTTG-TGGTT
131 GGACTAATCTCAACAAAATAATTATAGTTAGGTCGTAAACAATTGAAAGAAAAGCTTTGTTGG-T
* * * **
4718 TGCCAAATCGAAGACGATTCAAAACAGCACTAATGGGCCACGAAACTCCCG-AAAAAAGTGTTCT
195 TGCCAAATTGAAGCCGATTTAAAACAGCACTAATGGGCC-CGAAAGGCCCGAAAAAAAGTGTTCT
* * * * *
4782 GAATGAGCGAAAACTTCACAATTGACTAATCTCATAGAAATAATTATAGTTAGGCCATAAACAAT
259 GAATGAGCAAAAACTTCACAATAGACTAATCTCACAGAAATGATTATAGTTAGGCCGTAAACAAT
* * *
4847 GGAAAGAAAAGCTTTG-TGGTTTCC-AA-TACGAAGACGATTCAAAACAGCACTAATGGGCCCCG
324 TGAAAGAAAAGCTTTGTTGGTTGCCAAATTA--AAGACGATTCAAAACAGCACTAATGGGCCCAG
* *
4909 AAAGGCCCGAAATAACAAGTGTTCTGAATGAGTTAAAAACTTCGA-AGTGGACTAATCTCACCAA
387 AAAGGCACGAAATAACAAGTGTTCTGAATGAGATAAAAACTTC-ACAGTGGACTAATCTCACCAA
* *
4973 AATGATTATAGTTAGGCCGTAAACAATTGAAAGGAAAGCTTTGTGCTTTGCCAAATCGAAGACGA
451 AATGATTATAGTTAGGCCGTAAACAATTGAAAGAAAAGCTTT-TGCTTTGCCAAATCAAAGACGA
* *
5038 TTCAAAACAGCACTAATGGGC-CTCGAAAGTCCCGAAAAAAAAGTGTTCTGAATGAGCTAAAAAC
515 TTCAAAACAGCACTAATGGGCGC-CGAAAGGCCCGAAAAAAAAGTGTTCTGAATGAGATAAAAAC
* * **
5102 TTCATAATGGACTAATCTCATGAAAATAAG
579 TTCACAATGAACTAATCTCACCAAAATAAG
* * * * *
5132 TATAGTTAGGCCATAAACAATGGAAAGAAACGCTTTGTGGTTTGCCAAATCTAAGACGATTCAAA
1 TATAGTTAGGCCGTAAACAATTGAAAGAAAAGCTTTTTGGTTTGCCAAATCGAAGACGATTCAAA
5197 ACAGCACTAATGGGCCCCGAAAGGCCCGAAAAAAAGTGTTCTGAATGAGCTAAAAACTTCACAAT
66 ACAGCACTAATGGGCCCCGAAAGGCCCGAAAAAAAGTGTTCTGAATGAGCTAAAAACTTCACAAT
* * * * *
5262 GGACTATTCTCACCAAAATTATTATAGTTAGGTCGTAAACAATTGTAAGAAAATCTTTGTTGGTT
131 GGACTAATCTCAACAAAATAATTATAGTTAGGTCGTAAACAATTGAAAGAAAAGCTTTGTTGGTT
* *
5327 GCCAAATTGAAGCCGATTTAAAACAGCACTACTGGGCCCCGAAAGGCCCGAAATAAAAAGTGTTA
196 GCCAAATTGAAGCCGATTTAAAACAGCACTAATGGG-CCCGAAAGGCCCG-AA-AAAAAGTGTTC
* * * *
5392 TGAATGAGTTAAAAACTTCACAGTAGACTAATCTCACCGAAATGATAATAGTTAGGCCGTAAAC-
258 TGAATGAG-CAAAAACTTCACAATAGACTAATCTCACAGAAATGATTATAGTTAGGCCGTAAACA
* *
5456 ATTGAAAGAAAAGGTTT-TTGCTTTGCCAAAT
322 ATTGAAAGAAAAGCTTTGTTG-GTTGCCAAAT
Statistics
Matches: 851, Mismatches: 94, Indels: 34
0.87 0.10 0.03
Matches are distributed among these distances:
605 2 0.00
606 2 0.00
607 137 0.16
608 376 0.44
609 21 0.02
610 6 0.01
611 204 0.24
612 101 0.12
613 2 0.00
ACGTcount: A:0.40, C:0.17, G:0.19, T:0.24
Consensus pattern (608 bp):
TATAGTTAGGCCGTAAACAATTGAAAGAAAAGCTTTTTGGTTTGCCAAATCGAAGACGATTCAAA
ACAGCACTAATGGGCCCCGAAAGGCCCGAAAAAAAGTGTTCTGAATGAGCTAAAAACTTCACAAT
GGACTAATCTCAACAAAATAATTATAGTTAGGTCGTAAACAATTGAAAGAAAAGCTTTGTTGGTT
GCCAAATTGAAGCCGATTTAAAACAGCACTAATGGGCCCGAAAGGCCCGAAAAAAAGTGTTCTGA
ATGAGCAAAAACTTCACAATAGACTAATCTCACAGAAATGATTATAGTTAGGCCGTAAACAATTG
AAAGAAAAGCTTTGTTGGTTGCCAAATTAAAGACGATTCAAAACAGCACTAATGGGCCCAGAAAG
GCACGAAATAACAAGTGTTCTGAATGAGATAAAAACTTCACAGTGGACTAATCTCACCAAAATGA
TTATAGTTAGGCCGTAAACAATTGAAAGAAAAGCTTTTGCTTTGCCAAATCAAAGACGATTCAAA
ACAGCACTAATGGGCGCCGAAAGGCCCGAAAAAAAAGTGTTCTGAATGAGATAAAAACTTCACAA
TGAACTAATCTCACCAAAATAAG
Done.