Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009072.1 Corchorus capsularis cultivar CVL-1 contig09093, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  25159

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
28--95
26
2.6
26
88
9
95
35
2
8
52
1.47
103--163
25
2.5
25
86
5
81
44
0
19
36
1.51
234--277
21
2.1
21
86
0
61
38
9
38
13
1.77
2927--2956
2
15.5
2
93
6
53
50
0
0
50
1.00
9207--9249
22
2.0
22
100
0
86
48
9
18
23
1.76
9347--9380
3
11.3
3
100
0
68
32
0
0
67
0.91
10014--10054
21
2.0
21
95
0
73
56
0
7
36
1.27
10016--10061
21
2.3
21
85
7
60
58
0
4
36
1.18
11122--11170
20
2.6
17
77
20
53
28
12
6
53
1.62
11785--12006
109
2.0
109
98
0
426
32
7
22
37
1.82
18082--18149
24
2.8
23
84
8
82
4
23
14
57
1.56
20002--20056
27
2.0
27
100
0
110
36
21
21
20
1.95
20016--20089
26
2.8
26
83
2
76
40
21
20
17
1.91
20563--20625
30
2.1
30
94
5
110
19
34
17
28
1.94

Tables:   1

The End!