Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009074.1 Corchorus capsularis cultivar CVL-1 contig09095, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40578

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
6281--6328
2
24.0
2
100
0
96
50
0
50
0
1.00
9511--9561
2
25.5
2
100
0
102
50
49
0
0
1.00
9909--9978
36
1.9
37
94
2
124
31
27
11
30
1.91
11490--11546
19
3.2
18
74
23
57
71
0
28
0
0.86
13546--13595
24
2.1
24
100
0
100
54
4
8
34
1.49
16149--16270
32
3.7
34
72
16
103
27
18
30
24
1.98
17421--17990
222
2.6
222
90
1
856
41
24
8
25
1.83
25304--25342
21
1.9
21
94
5
71
5
28
35
30
1.79
25308--25356
21
2.3
21
85
0
62
10
32
26
30
1.89
26426--26465
5
8.8
5
94
5
52
20
0
0
80
0.72
26422--26469
4
11.5
4
82
12
53
20
0
0
79
0.74
26422--26469
17
2.8
18
82
17
59
20
0
0
79
0.74
26422--26469
21
2.3
22
89
7
73
20
0
0
79
0.74
33543--33591
21
2.3
21
85
0
62
10
32
28
28
1.90
34561--34598
20
2.0
20
84
5
51
44
18
2
34
1.64
36759--36908
68
2.1
70
89
4
232
38
7
16
38
1.76
36969--37012
2
22.5
2
90
4
72
50
0
0
50
1.00
37938--37999
32
1.9
32
93
0
106
50
14
12
22
1.77

Tables:   1

The End!