Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009075.1 Corchorus capsularis cultivar CVL-1 contig09096, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  55735

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4584--4636
22
2.4
22
84
6
63
7
9
5
77
1.12
5736--5777
21
2.0
22
85
4
59
38
14
26
21
1.91
10797--10869
30
2.4
30
88
0
101
39
21
26
12
1.89
10817--10876
30
2.0
30
100
0
120
33
20
30
16
1.94
19309--19338
16
1.9
16
93
6
53
46
13
3
36
1.60
20648--20696
19
2.4
21
80
6
57
55
10
2
32
1.45
22190--22216
10
2.7
10
100
0
54
18
18
51
11
1.74
22457--22497
14
2.9
14
88
0
55
73
7
0
19
1.07
22458--22497
21
1.9
21
84
0
53
72
7
0
20
1.08
37081--37185
39
2.8
37
76
12
106
50
23
12
13
1.75
41680--41713
9
3.8
9
88
0
50
20
14
29
35
1.93
41675--41712
18
2.1
19
90
5
60
21
15
26
36
1.93
43546--43570
13
1.9
13
100
0
50
88
12
0
0
0.53
45922--45959
19
2.0
19
85
10
51
28
13
21
36
1.91
55636--55716
36
2.2
36
95
0
144
17
35
35
11
1.85

Tables:   1

The End!