Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009078.1 Corchorus capsularis cultivar CVL-1 contig09099, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2879
ACGTcount: A:0.28, C:0.18, G:0.19, T:0.34


Found at i:2802 original size:35 final size:37

Alignment explanation


    Indices: 2728--2803  Score: 95
    Period size: 35  Copynumber: 2.1  Consensus size: 37

       2718 ATTAAAAGCA

                *                                
       2728 GAAACAGAAAATAAAATATTTTTTTAAAAAGAAAACG
          1 GAAAAAGAAAATAAAATATTTTTTTAAAAAGAAAACG

                         *                     *  
       2765 GAAAAAGAAAAT-TAAT-TTTTTTTAAAGAA-AAATCG
          1 GAAAAAGAAAATAAAATATTTTTTTAAA-AAGAAAACG

                
       2800 GAAA
          1 GAAA

       2804 CCCTAATTTT


Statistics
Matches: 35,  Mismatches: 3, Indels: 4
        0.83            0.07        0.10

Matches are distributed among these distances:
  35   19  0.54
  36    5  0.14
  37   11  0.31

ACGTcount: A:0.58, C:0.04, G:0.12, T:0.26


Consensus pattern (37 bp):   
GAAAAAGAAAATAAAATATTTTTTTAAAAAGAAAACG
Done.