Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009079.1 Corchorus capsularis cultivar CVL-1 contig09100, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  87443

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
156--188
6
5.5
6
100
0
66
54
15
0
30
1.41
185--229
13
3.5
13
90
3
74
55
8
13
22
1.65
185--237
25
2.1
25
89
6
81
58
9
11
20
1.60
1849--1879
16
1.9
16
100
0
62
58
19
6
16
1.59
4075--4121
21
2.3
20
78
7
51
65
8
8
17
1.44
5480--5519
19
2.2
18
86
4
53
30
20
5
45
1.72
7096--7369
41
6.7
41
78
7
272
39
28
10
20
1.86
7096--7376
82
3.4
82
92
2
433
39
28
11
19
1.87
9835--9874
19
2.2
18
86
4
53
30
20
5
45
1.72
12650--12746
33
2.9
33
90
0
149
30
7
18
43
1.77
22555--22619
30
2.2
30
88
5
96
23
40
29
7
1.82
26543--26572
12
2.5
12
94
0
51
23
33
33
10
1.88
26552--26638
42
2.1
42
86
4
122
22
41
24
11
1.87
33045--33132
42
2.1
42
89
0
131
25
40
26
7
1.82
33087--33116
12
2.5
12
94
0
51
16
40
30
13
1.87
37538--37615
30
2.5
30
85
8
95
23
41
26
8
1.84
69931--70099
89
1.9
89
100
0
338
31
18
14
35
1.91

Tables:   1

The End!