Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009085.1 Corchorus capsularis cultivar CVL-1 contig09106, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41171

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--37
2
18.5
2
100
0
74
51
0
0
48
1.00
7696--7759
30
2.1
30
91
0
101
42
9
12
35
1.75
9039--9135
31
3.2
30
80
2
106
30
14
16
38
1.89
11808--11843
17
2.1
17
100
0
72
44
11
16
27
1.82
14263--14298
13
2.7
13
86
4
54
66
11
0
22
1.22
15266--15303
20
2.0
19
85
10
51
42
13
5
39
1.66
15845--15886
14
2.8
16
79
17
54
61
11
4
21
1.48
16601--16629
13
2.1
14
93
6
51
62
3
6
27
1.37
19270--19296
2
13.5
2
100
0
54
51
0
0
48
1.00
25681--25733
2
27.5
2
92
7
92
52
0
0
47
1.00
26220--26276
29
2.0
29
89
0
87
36
7
3
52
1.46
31946--31999
26
2.0
28
92
7
94
57
0
18
24
1.40
35504--35610
35
3.1
35
86
4
119
37
14
8
39
1.77
35522--35621
34
2.9
34
89
1
137
37
15
10
38
1.80
35583--35936
56
6.4
56
94
0
586
38
17
5
38
1.73
35617--35656
21
1.9
21
84
0
53
35
20
2
42
1.65
35686--35859
35
4.8
35
69
14
118
38
16
5
39
1.72
35524--35892
19
20.1
19
65
22
94
38
17
6
37
1.75
35742--35915
35
4.8
35
68
14
109
39
16
5
39
1.71
35732--35939
21
11.0
20
68
18
115
39
17
4
37
1.70
36013--36074
19
3.3
19
71
8
63
29
11
3
56
1.50
35955--36074
38
3.1
38
81
4
143
26
13
5
55
1.59
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
38238--38300
32
2.0
32
87
0
90
28
15
20
34
1.94

Tables:   1

The End!