Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009088.1 Corchorus capsularis cultivar CVL-1 contig09109, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33071

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
441--474
10
3.5
10
84
8
52
17
0
0
82
0.67
547--580
8
4.1
8
85
7
50
23
2
14
58
1.50
2181--2251
33
2.2
33
89
0
106
28
18
18
35
1.94
3022--3097
30
2.5
30
85
4
91
13
30
30
26
1.94
3820--3882
30
2.1
30
91
5
101
19
36
15
28
1.92
4203--4276
33
2.2
33
90
0
112
41
22
9
25
1.84
4215--4285
33
2.2
33
92
5
117
40
16
8
33
1.79
4304--4408
33
3.2
32
79
5
111
44
21
8
24
1.80
10657--10745
45
2.0
45
95
0
160
32
19
22
25
1.97
11133--11204
37
2.0
36
84
10
94
44
0
6
48
1.29
11601--11739
69
2.0
69
91
2
226
47
14
14
23
1.81
13418--13477
23
2.8
21
78
9
75
38
13
23
25
1.91
20037--20069
15
2.1
17
88
11
52
9
15
36
39
1.79
20440--20465
11
2.4
11
100
0
52
46
7
0
46
1.31
21225--21253
7
4.1
7
100
0
58
27
27
0
44
1.54
21497--21571
16
4.8
16
80
3
89
6
12
40
41
1.68
21497--21571
31
2.4
32
86
2
98
6
12
40
41
1.68
21733--21844
22
5.0
22
75
8
102
34
6
20
38
1.78
21861--21939
22
3.5
22
76
8
70
44
10
7
37
1.67
21882--22050
22
7.5
22
70
13
71
38
5
15
40
1.72
21847--22050
44
4.6
44
73
11
130
39
5
15
39
1.72
22435--22570
16
8.6
16
71
13
102
35
35
19
9
1.85
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
23415--23764
175
2.0
175
100
0
700
35
20
20
24
1.96
26058--26096
17
2.3
17
86
0
51
25
0
2
71
0.98
26691--26741
17
3.0
17
97
0
93
29
21
19
29
1.98
27187--27224
15
2.4
17
86
8
53
71
2
0
26
1.00
30039--30067
13
2.1
14
93
6
51
20
20
10
48
1.79
30274--30413
39
3.6
39
94
0
226
37
7
22
32
1.83
30613--30719
33
3.2
33
82
2
126
22
41
28
8
1.83
30703--30775
33
2.2
33
97
0
137
20
45
24
9
1.81
31703--31736
17
2.0
17
94
0
59
50
14
5
29
1.67
31810--31844
9
3.9
9
96
0
61
85
0
0
14
0.59

Tables:   1

The End!