Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009090.1 Corchorus capsularis cultivar CVL-1 contig09111, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  30016

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2145--2169
6
4.2
6
100
0
50
16
16
52
16
1.76
13762--13793
16
1.9
17
93
6
57
18
9
9
62
1.52
15528--15568
7
6.1
7
83
8
50
48
0
2
48
1.14
15523--15564
20
2.2
20
91
4
68
45
0
2
52
1.13
15465--15562
37
2.5
40
73
17
98
45
1
5
47
1.31
15597--15625
11
2.6
11
100
0
58
41
41
17
0
1.49
16034--16076
20
2.1
21
86
4
61
53
18
13
13
1.73
18323--18402
40
2.0
40
100
0
160
32
7
20
40
1.80
18674--18733
2
30.5
2
83
9
79
50
0
1
48
1.11
23387--23416
2
15.0
2
100
0
60
50
0
0
50
1.00
24123--24148
1
26.0
1
100
0
52
100
0
0
0
0.00
24133--24219
45
1.9
45
88
11
133
62
5
10
21
1.48
25489--25561
3
24.7
3
97
2
139
34
0
0
65
0.93
29684--29756
30
2.4
30
93
0
119
20
45
9
24
1.81
29798--29827
15
2.0
15
93
0
51
20
56
0
23
1.42
29785--29949
48
3.4
48
78
3
179
26
48
3
21
1.67
29719--29999
96
2.9
99
79
3
352
29
45
6
19
1.74

Tables:   1

The End!