Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009091.1 Corchorus capsularis cultivar CVL-1 contig09112, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41038

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11--384
48
7.8
49
80
10
380
28
51
3
16
1.61
1--244
96
2.5
96
94
0
425
27
52
2
17
1.57
15--390
144
2.6
143
84
4
456
27
51
3
17
1.61
18--441
96
4.4
96
82
5
303
26
52
3
16
1.59
10482--10525
11
4.0
11
87
0
61
50
6
2
40
1.42
10478--10524
22
2.1
22
92
0
76
48
6
2
42
1.40
11467--11494
2
14.0
2
100
0
56
50
0
0
50
1.00
12103--12153
2
26.0
2
96
4
95
0
50
0
49
1.00
13483--13760
137
2.0
138
95
1
495
39
10
20
29
1.86
14236--14262
2
13.5
2
100
0
54
0
48
0
51
1.00
18270--18686
33
12.6
33
91
1
458
27
36
17
17
1.93
19313--19357
12
3.8
12
81
0
54
20
4
53
22
1.63
19313--19357
18
2.5
18
81
0
63
20
4
53
22
1.63
23874--23905
15
2.1
15
100
0
64
34
6
18
40
1.76
26344--26411
25
2.8
25
97
2
129
36
8
14
39
1.78
29311--29356
24
1.9
24
86
0
65
41
2
8
47
1.46
34573--34639
35
1.9
35
87
6
100
20
16
22
40
1.91
34537--34795
99
2.6
97
84
4
315
22
19
22
36
1.95
34706--34927
64
3.5
62
79
10
220
23
19
21
35
1.96
34873--34949
29
2.7
29
81
4
93
20
24
23
31
1.98
34980--35025
8
5.8
8
84
0
56
32
19
2
45
1.62
34979--35057
24
3.3
24
92
0
122
30
25
3
40
1.73
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
34988--35057
16
4.4
16
72
0
59
30
25
4
40
1.75
35063--35440
36
10.6
36
72
7
245
17
16
28
36
1.93
35055--35436
71
5.3
72
73
6
285
18
17
28
35
1.93
35063--35439
107
3.5
107
88
0
531
17
16
28
36
1.93
36421--36463
20
2.2
20
92
8
72
83
0
16
0
0.64
36430--36463
10
3.4
10
83
0
50
85
0
14
0
0.60
37537--38006
235
2.0
235
96
0
859
41
10
8
39
1.70
40717--40742
2
13.0
2
100
0
52
50
0
0
50
1.00

Tables:   1

The End!