Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009092.1 Corchorus capsularis cultivar CVL-1 contig09113, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 731

Length: 1219
ACGTcount: A:0.27, C:0.22, G:0.19, T:0.32


Found at i:43 original size:21 final size:21

Alignment explanation


    Indices: 1--44  Score: 52
    Period size: 21  Copynumber: 2.1  Consensus size: 21

                       *     *   
          1 GGTGCCCAGGCCAACCGGCTG
          1 GGTGCCCAGGCAAACCGCCTG

                 *        *      
         22 GGTGCGCAGGCAAAGCGCCTG
          1 GGTGCCCAGGCAAACCGCCTG

              
         43 GG
          1 GG

         45 CGCACAGCCA


Statistics
Matches: 19,  Mismatches: 4, Indels: 0
        0.83            0.17        0.00

Matches are distributed among these distances:
  21   19  1.00

ACGTcount: A:0.16, C:0.32, G:0.43, T:0.09


Consensus pattern (21 bp):   
GGTGCCCAGGCAAACCGCCTG
Done.