Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009094.1 Corchorus capsularis cultivar CVL-1 contig09115, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  62021

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--657
192
3.3
194
82
7
715
32
13
17
36
1.89
6321--6449
63
2.1
62
95
1
231
37
22
15
24
1.93
7713--7753
21
2.0
21
90
0
64
51
4
2
41
1.36
9300--9327
3
9.3
3
100
0
56
67
0
0
32
0.91
10945--10978
2
17.5
2
93
6
61
50
0
0
50
1.00
11648--11735
3
28.3
3
87
6
106
62
0
1
36
1.03
11929--11965
3
12.3
3
94
0
65
67
0
0
32
0.91
12904--13321
209
2.0
213
91
1
691
49
2
10
37
1.51
14819--14879
32
1.9
32
96
0
113
26
32
19
21
1.97
15027--15100
37
2.0
37
94
0
130
47
9
6
36
1.63
15269--15296
12
2.3
12
100
0
56
60
7
0
32
1.24
28429--28474
19
2.3
19
81
7
56
34
2
0
63
1.07
28452--28490
19
2.2
19
86
9
55
28
7
0
64
1.21
28911--29739
417
2.0
416
94
3
1455
35
13
13
36
1.85
29713--29768
29
2.0
28
96
3
103
17
28
30
23
1.97
32715--32800
44
1.9
45
97
2
165
32
6
6
53
1.55
34980--35023
21
2.1
21
86
0
61
18
38
9
34
1.82
35095--35140
15
3.4
15
72
27
57
32
28
0
39
1.57
35094--35153
25
2.4
25
97
2
113
33
26
0
40
1.57
40083--40107
8
3.1
8
100
0
50
72
0
12
16
1.13
40661--40862
110
1.8
111
90
1
325
44
21
5
28
1.75
44078--44118
19
2.2
19
100
0
82
51
14
9
24
1.72
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53738--53767
10
3.0
10
90
0
51
33
40
0
26
1.57
54237--54270
18
1.9
17
88
5
50
47
23
0
29
1.52
58703--58729
2
13.5
2
100
0
54
51
0
0
48
1.00
61174--61214
21
2.0
21
90
0
64
21
12
31
34
1.91
61355--61392
17
2.2
18
85
4
51
26
13
36
23
1.91

Tables:   1

The End!