Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009095.1 Corchorus capsularis cultivar CVL-1 contig09116, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  41123

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7432--7538
33
3.2
33
90
2
171
20
39
29
10
1.86
7432--7555
66
1.9
66
86
3
178
20
38
29
11
1.88
7516--7607
33
2.8
33
80
9
91
23
40
22
13
1.89
13037--13144
33
3.3
33
84
7
139
19
41
27
11
1.85
13037--13178
33
4.3
33
85
5
119
20
42
26
10
1.84
13037--13177
66
2.1
66
81
5
160
19
42
26
10
1.84
13160--13188
10
2.9
10
100
0
58
27
51
20
0
1.47
13693--14279
293
2.0
293
97
0
1111
28
14
23
33
1.94
14293--14572
135
2.1
135
90
0
434
20
25
25
28
1.99
15480--15530
21
2.6
19
77
14
59
56
9
23
9
1.61
15868--15905
17
2.2
18
85
4
51
28
10
36
23
1.88
16260--16585
156
2.1
155
78
6
338
34
19
14
31
1.92
16712--16758
21
2.2
22
84
3
60
40
14
29
14
1.87
24883--24925
22
1.9
23
85
4
61
46
0
0
53
1.00
27633--27674
16
2.7
15
82
7
57
26
7
59
7
1.50
30073--30114
3
13.7
3
90
5
66
64
2
0
33
1.07
30811--30853
20
2.2
19
87
4
59
53
4
2
39
1.34
31804--31836
17
2.0
17
88
5
50
57
15
27
0
1.38

Tables:   1

The End!