Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009096.1 Corchorus capsularis cultivar CVL-1 contig09117, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3894
ACGTcount: A:0.30, C:0.14, G:0.15, T:0.41


Found at i:3727 original size:21 final size:21

Alignment explanation


    Indices: 3703--3747  Score: 83
    Period size: 20  Copynumber: 2.2  Consensus size: 21

       3693 TTAAAAAAAA

                                 
       3703 AAAGGAAAAATAATGGTCTGC
          1 AAAGGAAAAATAATGGTCTGC

                                 
       3724 AAA-GAAAAATAATGGTCTGC
          1 AAAGGAAAAATAATGGTCTGC

                
       3744 AAAG
          1 AAAG

       3748 TTATCATTAA


Statistics
Matches: 23,  Mismatches: 0, Indels: 2
        0.92            0.00        0.08

Matches are distributed among these distances:
  20   20  0.87
  21    3  0.13

ACGTcount: A:0.51, C:0.09, G:0.22, T:0.18


Consensus pattern (21 bp):   
AAAGGAAAAATAATGGTCTGC

Done.