Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009097.1 Corchorus capsularis cultivar CVL-1 contig09118, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  60392

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
345--402
2
29.0
2
89
0
89
44
0
5
50
1.24
550--601
25
2.1
25
96
0
95
50
9
15
25
1.74
3719--3768
24
2.1
24
85
7
66
48
12
0
40
1.40
4601--4630
15
2.0
15
93
0
51
36
0
43
20
1.52
5856--5884
3
9.7
3
100
0
58
34
0
0
65
0.93
9562--9603
21
2.0
21
86
4
59
33
11
7
47
1.68
14962--15008
25
2.0
23
87
8
67
59
2
0
38
1.09
15512--15562
25
2.0
25
85
11
68
52
1
7
37
1.42
15725--15779
25
2.2
25
96
0
101
41
5
7
45
1.55
21300--21324
12
2.1
12
100
0
50
64
0
36
0
0.94
23989--24126
69
2.0
69
95
0
249
18
30
26
24
1.98
29860--29897
20
1.9
20
88
0
58
23
7
13
55
1.64
29956--29981
2
13.0
2
100
0
52
50
0
0
50
1.00
38071--38309
131
1.8
131
82
1
309
15
9
20
55
1.67
41402--41448
24
2.0
24
95
0
85
23
17
8
51
1.72
41585--41685
30
3.4
29
68
16
91
39
9
10
39
1.74
41574--41698
60
2.1
61
98
1
243
39
9
9
41
1.71
41634--41850
104
2.1
103
85
1
290
35
12
11
39
1.80
43435--43507
31
2.4
31
90
0
119
17
20
32
28
1.96
47185--47314
28
4.7
28
77
9
149
44
21
14
19
1.86
47969--48584
29
21.3
29
74
7
396
30
25
22
20
1.98
48025--48392
144
2.6
143
93
0
630
33
24
22
20
1.97
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48286--48584
117
2.6
115
85
3
386
26
26
23
23
2.00
48711--48897
29
6.4
29
89
0
293
25
29
23
20
1.99
48711--48921
87
2.4
86
88
3
271
26
29
24
19
1.99
48927--49026
27
3.7
27
72
5
67
26
37
31
6
1.80
49033--49113
28
2.9
28
92
0
135
28
29
28
13
1.94
51377--51437
26
2.3
27
82
5
70
31
26
22
19
1.98
53411--53457
22
2.1
22
100
0
94
38
27
0
34
1.57
53892--53916
13
1.9
13
100
0
50
48
8
0
44
1.32
58274--58446
83
2.1
84
94
1
303
23
15
13
47
1.81
58426--58488
31
2.0
31
96
0
117
20
15
20
42
1.89
58969--58994
13
2.0
13
100
0
52
38
15
15
30
1.88

Tables:   1

The End!