Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009098.1 Corchorus capsularis cultivar CVL-1 contig09119, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45216

Tables:   1   

This is table  1  of  1  ( 24 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
414--447
16
2.1
16
100
0
68
17
11
17
52
1.73
10776--10816
21
2.0
21
85
0
55
65
7
4
21
1.37
12910--12943
16
2.1
16
94
0
59
41
17
32
8
1.80
14322--15385
48
22.2
48
74
8
643
23
24
26
25
2.00
14926--15378
195
2.3
193
79
3
473
22
25
27
24
2.00
18319--18346
2
14.0
2
100
0
56
50
0
0
50
1.00
18519--18562
21
2.1
21
91
0
70
22
20
11
45
1.83
18557--18635
31
2.5
31
93
0
131
17
24
3
54
1.59
18576--18632
16
3.6
16
69
4
53
17
24
3
54
1.59
20528--20713
22
8.6
22
72
5
137
38
15
12
33
1.85
20755--20970
22
9.3
22
66
16
87
33
20
6
39
1.79
20875--20957
22
3.7
22
80
4
96
32
18
9
39
1.83
20861--20970
45
2.5
43
77
15
116
34
19
7
39
1.79
24453--24495
2
21.5
2
95
0
77
48
2
0
48
1.14
27360--27398
17
2.3
17
95
0
69
28
35
5
30
1.79
28533--28569
19
1.9
19
100
0
74
27
10
10
51
1.70
35343--35371
2
14.5
2
100
0
58
48
0
0
51
1.00
39377--39633
127
2.0
127
99
0
505
31
17
15
35
1.91
43055--43103
10
4.9
10
82
9
55
2
14
36
46
1.56
43055--43092
10
3.7
10
89
6
58
0
15
39
44
1.47
43711--43743
6
5.5
6
100
0
66
18
15
0
66
1.25
44641--44668
6
4.7
6
100
0
56
50
32
0
17
1.47
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
45070--45118
20
2.5
19
77
9
53
24
12
4
59
1.50
45084--45126
21
2.0
21
82
8
52
27
16
4
51
1.64

Tables:   1

The End!