Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009101.1 Corchorus capsularis cultivar CVL-1 contig09122, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 8669
ACGTcount: A:0.33, C:0.16, G:0.17, T:0.35


Found at i:5290 original size:27 final size:27

Alignment explanation


    Indices: 5237--5294  Score: 71
    Period size: 27  Copynumber: 2.1  Consensus size: 27

       5227 TTTGCTACTC

                *          * *   **    
       5237 AACTTTTCCTACTCCTTTACATTACCA
          1 AACTGTTCCTACTCCATAACAACACCA

                                       
       5264 AACTGTTCCTACTCCATAACAACACCA
          1 AACTGTTCCTACTCCATAACAACACCA

                
       5291 AACT
          1 AACT

       5295 ACACCAAACT


Statistics
Matches: 26,  Mismatches: 5, Indels: 0
        0.84            0.16        0.00

Matches are distributed among these distances:
  27   26  1.00

ACGTcount: A:0.33, C:0.34, G:0.02, T:0.31


Consensus pattern (27 bp):   
AACTGTTCCTACTCCATAACAACACCA

Found at i:6186 original size:21 final size:21

Alignment explanation


    Indices: 6157--6212  Score: 76
    Period size: 21  Copynumber: 2.6  Consensus size: 21

       6147 CTTGATCGGC

                *                
       6157 CACAAGCCCGGCCATCACCAT
          1 CACATGCCCGGCCATCACCAT

                      *          
       6178 CACATGCCCGACCATCACCAT
          1 CACATGCCCGGCCATCACCAT

             *            
       6199 CGCATGACCCGGCC
          1 CACATG-CCCGGCC

       6213 TTGCCCATAC


Statistics
Matches: 30,  Mismatches: 4, Indels: 1
        0.86            0.11        0.03

Matches are distributed among these distances:
  21   24  0.80
  22    6  0.20

ACGTcount: A:0.25, C:0.48, G:0.16, T:0.11


Consensus pattern (21 bp):   
CACATGCCCGGCCATCACCAT
Done.