Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009104.1 Corchorus capsularis cultivar CVL-1 contig09125, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6160
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30


Found at i:5797 original size:21 final size:21

Alignment explanation


    Indices: 5772--5812  Score: 82
    Period size: 21  Copynumber: 2.0  Consensus size: 21

       5762 AAACCATCAA

                                 
       5772 AATGCCAGCTCACCATGTCAG
          1 AATGCCAGCTCACCATGTCAG

                                
       5793 AATGCCAGCTCACCATGTCA
          1 AATGCCAGCTCACCATGTCA

       5813 ATGCCTCAAT


Statistics
Matches: 20,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  21   20  1.00

ACGTcount: A:0.29, C:0.34, G:0.17, T:0.20


Consensus pattern (21 bp):   
AATGCCAGCTCACCATGTCAG
Done.