Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009105.1 Corchorus capsularis cultivar CVL-1 contig09126, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2399
ACGTcount: A:0.32, C:0.24, G:0.15, T:0.29


Found at i:695 original size:12 final size:12

Alignment explanation


    Indices: 678--710  Score: 66
    Period size: 12  Copynumber: 2.8  Consensus size: 12

        668 ATTAACTACC

                        
        678 TCGGTTTGACCA
          1 TCGGTTTGACCA

                        
        690 TCGGTTTGACCA
          1 TCGGTTTGACCA

                     
        702 TCGGTTTGA
          1 TCGGTTTGA

        711 GGATGACAAG


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   21  1.00

ACGTcount: A:0.15, C:0.21, G:0.27, T:0.36


Consensus pattern (12 bp):   
TCGGTTTGACCA
Done.