Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009106.1 Corchorus capsularis cultivar CVL-1 contig09127, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20159

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
812--845
17
2.0
17
94
0
59
23
5
14
55
1.61
1425--1468
22
2.0
22
86
0
61
22
22
25
29
1.99
3155--3185
15
2.0
16
93
6
55
16
0
0
83
0.64
3259--3292
8
4.1
8
92
7
59
23
0
14
61
1.33
3259--3292
17
2.1
17
94
5
61
23
0
14
61
1.33
3633--3720
30
3.1
30
74
12
112
38
21
17
22
1.93
4283--4338
23
2.4
23
100
0
112
7
25
44
23
1.78
7958--7996
10
3.7
11
86
6
55
82
0
17
0
0.68
7959--7996
17
2.4
17
82
8
53
84
0
15
0
0.63
8002--8157
44
3.3
44
77
12
168
39
8
18
33
1.81
8471--8530
29
2.1
29
84
3
77
65
0
21
13
1.27
8808--8858
5
10.8
5
85
12
56
82
0
17
0
0.67
8807--8878
22
3.3
22
78
16
62
76
0
19
4
0.95
10028--10135
36
3.0
36
78
2
128
17
13
27
40
1.88
10024--10123
36
2.8
36
81
1
130
14
17
27
42
1.87
9943--10830
261
3.4
261
91
0
1411
21
17
22
39
1.93
10115--10308
69
2.8
70
85
2
255
23
16
20
39
1.92
10289--10396
36
3.0
36
73
2
110
20
13
24
41
1.88
10376--10569
71
2.7
71
91
0
300
22
17
22
38
1.93
10115--10918
332
2.4
322
79
10
795
22
17
21
38
1.93
10637--10912
141
2.0
142
84
5
371
23
17
21
38
1.94
10637--10912
71
3.9
71
87
2
369
23
17
21
38
1.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
16417--16526
33
3.3
33
83
5
116
21
38
27
12
1.90
16470--16573
10
10.1
11
69
29
70
16
50
25
7
1.72
16499--16584
20
4.3
20
98
0
163
16
52
25
5
1.66
16506--16583
10
7.8
10
80
0
93
16
55
24
3
1.58
17491--17523
17
1.9
17
100
0
66
54
18
3
24
1.57
19131--19251
33
3.8
31
81
5
127
30
10
19
38
1.86
19193--19252
30
2.0
30
87
6
86
26
13
25
35
1.93

Tables:   1

The End!