Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009107.1 Corchorus capsularis cultivar CVL-1 contig09128, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 12556
ACGTcount: A:0.31, C:0.18, G:0.21, T:0.30


Found at i:7292 original size:12 final size:12

Alignment explanation


    Indices: 7271--7310  Score: 62
    Period size: 12  Copynumber: 3.3  Consensus size: 12

       7261 GTTGTGGCCG

                 *      
       7271 GTTGCCCCATGC
          1 GTTGCTCCATGC

                        
       7283 GTTGCTCCATGC
          1 GTTGCTCCATGC

             *          
       7295 GATGCTCCATGC
          1 GTTGCTCCATGC

                
       7307 GTTG
          1 GTTG

       7311 GCCGGTCATG


Statistics
Matches: 25,  Mismatches: 3, Indels: 0
        0.89            0.11        0.00

Matches are distributed among these distances:
  12   25  1.00

ACGTcount: A:0.10, C:0.33, G:0.28, T:0.30


Consensus pattern (12 bp):   
GTTGCTCCATGC

Found at i:8484 original size:21 final size:20

Alignment explanation


    Indices: 8442--8484  Score: 50
    Period size: 21  Copynumber: 2.1  Consensus size: 20

       8432 ATTATCAAAT

                *       *       
       8442 AAAAGAAAGCAATTAAACTA
          1 AAAACAAAGCAAGTAAACTA

                              *  
       8462 AAAACAAAGCAAAGTAAATTA
          1 AAAACAAAGC-AAGTAAACTA

              
       8483 AA
          1 AA

       8485 TCTAAATCTA


Statistics
Matches: 19,  Mismatches: 3, Indels: 1
        0.83            0.13        0.04

Matches are distributed among these distances:
  20    9  0.47
  21   10  0.53

ACGTcount: A:0.67, C:0.09, G:0.09, T:0.14


Consensus pattern (20 bp):   
AAAACAAAGCAAGTAAACTA
Done.