Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009117.1 Corchorus capsularis cultivar CVL-1 contig09138, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  27468

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1039--1302
132
2.0
132
91
1
431
35
19
12
32
1.89
5164--5385
57
3.9
56
82
3
255
27
24
22
25
2.00
9316--9359
19
2.2
20
84
11
56
59
2
4
34
1.30
9820--9859
6
6.5
6
86
13
55
0
2
17
80
0.83
10894--10968
29
2.5
29
87
8
98
32
18
9
40
1.83
14759--14786
12
2.3
12
100
0
56
28
25
7
39
1.82
14833--14938
53
2.0
52
90
1
167
37
20
7
33
1.81
19724--19759
18
2.0
18
88
0
54
27
25
11
36
1.90
21969--22004
16
2.3
16
90
4
56
8
8
38
44
1.65
22410--22442
2
16.5
2
100
0
66
48
0
0
51
1.00
23584--23648
18
3.6
18
85
0
76
27
12
29
30
1.93
23628--23699
30
2.4
30
77
9
83
26
16
29
27
1.97
23783--23815
15
2.2
15
94
0
57
30
21
36
12
1.90
23790--23823
15
2.3
15
89
0
50
29
17
41
11
1.85

Tables:   1

The End!