Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009118.1 Corchorus capsularis cultivar CVL-1 contig09139, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4738
ACGTcount: A:0.34, C:0.13, G:0.18, T:0.35


Found at i:4376 original size:24 final size:24

Alignment explanation


    Indices: 4338--4383  Score: 76
    Period size: 25  Copynumber: 1.9  Consensus size: 24

       4328 ACCAATATTT

                                     
       4338 ATTTTTTAAATAAAATAATAATTAA
          1 ATTTTTTAAATAAAATAA-AATTAA

                                  
       4363 ATTTTTTAAA-AAAATAAAATT
          1 ATTTTTTAAATAAAATAAAATT

       4384 TACACATTAA


Statistics
Matches: 21,  Mismatches: 0, Indels: 2
        0.91            0.00        0.09

Matches are distributed among these distances:
  23    4  0.19
  24    7  0.33
  25   10  0.48

ACGTcount: A:0.57, C:0.00, G:0.00, T:0.43


Consensus pattern (24 bp):   
ATTTTTTAAATAAAATAAAATTAA

Found at i:4539 original size:29 final size:30

Alignment explanation


    Indices: 4481--4541  Score: 88
    Period size: 29  Copynumber: 2.1  Consensus size: 30

       4471 GTTCTAATTA

                   *                 *    
       4481 ATGTATACATATAAATTATTCAATTTTATT
          1 ATGTATAAATATAAATTATTCAATTATATT

                                *         
       4511 ATGTATAAATAT-AATTATTTAATTATATT
          1 ATGTATAAATATAAATTATTCAATTATATT

              
       4540 AT
          1 AT

       4542 ATTATTTATA


Statistics
Matches: 28,  Mismatches: 3, Indels: 1
        0.88            0.09        0.03

Matches are distributed among these distances:
  29   17  0.61
  30   11  0.39

ACGTcount: A:0.43, C:0.03, G:0.03, T:0.51


Consensus pattern (30 bp):   
ATGTATAAATATAAATTATTCAATTATATT
Done.