Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009120.1 Corchorus capsularis cultivar CVL-1 contig09141, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23075

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
90--145
21
2.7
21
94
0
94
33
12
26
26
1.92
11771--11830
29
2.1
28
81
12
68
43
11
5
40
1.63
17575--17646
28
2.5
29
81
4
92
36
13
29
20
1.92
20166--20195
15
2.0
15
93
0
51
20
10
26
43
1.83
21234--21504
22
12.5
22
68
12
78
36
13
9
40
1.77
21278--21358
23
3.5
23
79
3
83
40
11
6
41
1.65
21522--21580
19
3.1
19
87
2
82
22
22
11
44
1.85
21687--21878
22
8.6
22
74
7
138
35
12
9
42
1.75
21661--21853
44
4.4
43
77
7
167
35
11
9
43
1.74
21954--22015
22
2.8
22
80
9
65
38
19
11
30
1.87
22121--22318
22
8.9
22
80
9
111
37
16
10
34
1.83
22113--22320
44
4.7
44
78
9
165
37
17
10
34
1.84
22168--22273
44
2.4
44
93
0
176
34
16
14
34
1.88
22121--22320
66
3.0
66
78
8
183
38
17
10
34
1.84
22450--22475
6
4.3
6
100
0
52
15
0
34
50
1.45
22601--22664
31
2.1
31
88
5
96
45
3
20
31
1.67
22702--22742
2
20.5
2
90
9
66
46
0
2
51
1.14

Tables:   1

The End!