Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009122.1 Corchorus capsularis cultivar CVL-1 contig09143, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  74704

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
746--810
30
2.2
30
100
0
130
36
20
6
36
1.77
4520--4548
1
29.0
1
100
0
58
0
0
0
100
0.00
8777--9343
168
3.4
163
73
12
395
28
26
14
31
1.94
13843--13928
16
5.4
14
77
18
73
33
38
19
8
1.82
13843--13932
32
2.8
32
93
0
153
34
37
18
8
1.82
14764--14820
16
3.6
15
83
9
69
36
33
19
10
1.86
14811--14853
18
2.4
18
92
0
68
41
30
11
16
1.83
17351--17476
55
2.3
55
97
0
234
29
19
17
33
1.95
21993--22038
18
2.6
18
80
13
67
54
21
8
15
1.68
27015--27330
165
1.9
165
83
5
415
29
26
13
31
1.94
46671--46715
22
2.0
22
95
0
81
22
33
17
26
1.96
60828--60862
18
1.9
18
88
0
52
42
11
11
34
1.77
62375--62426
6
8.0
6
78
16
50
0
15
3
80
0.85
74334--74377
21
2.1
21
87
8
63
18
34
9
38
1.82
74621--74704
33
2.5
34
92
3
134
10
38
40
10
1.75

Tables:   1

The End!