Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWWV01009123.1 Corchorus capsularis cultivar CVL-1 contig09144, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 104546
ACGTcount: A:0.33, C:0.17, G:0.17, T:0.32
Found at i:108 original size:33 final size:32
Alignment explanation
Indices: 39--101 Score: 83
Period size: 32 Copynumber: 1.9 Consensus size: 32
29 ATTTTGGTCT
* *
39 AGCCGCCCCATGAGGGCGGCCTGCCGTGGCGA
1 AGCCGCCCCATGAGGGAGGCCCGCCGTGGCGA
71 AGCCGCCCCAGTG-GGGAGGCTCCGCCGTGGC
1 AGCCGCCCCA-TGAGGGAGGC-CCGCCGTGGC
102 TGAGCCGTCC
Statistics
Matches: 27, Mismatches: 2, Indels: 3
0.84 0.06 0.09
Matches are distributed among these distances:
32 16 0.59
33 11 0.41
ACGTcount: A:0.11, C:0.38, G:0.41, T:0.10
Consensus pattern (32 bp):
AGCCGCCCCATGAGGGAGGCCCGCCGTGGCGA
Found at i:398 original size:16 final size:16
Alignment explanation
Indices: 374--459 Score: 104
Period size: 16 Copynumber: 5.4 Consensus size: 16
364 TGGATTTGGG
374 TCAGGTTAATTCGGGT
1 TCAGGTTAATTCGGGT
* *
390 TCGGGTTAATTTGGG-
1 TCAGGTTAATTCGGGT
405 TCAGGTTAATTCGGGT
1 TCAGGTTAATTCGGGT
* *
421 TCATGTTGAATTTGGG-
1 TCAGGTT-AATTCGGGT
437 TCAGGTTAATTCGGGT
1 TCAGGTTAATTCGGGT
*
453 TCGGGTT
1 TCAGGTT
460 CTGTTTGGGT
Statistics
Matches: 58, Mismatches: 9, Indels: 6
0.79 0.12 0.08
Matches are distributed among these distances:
15 20 0.34
16 31 0.53
17 7 0.12
ACGTcount: A:0.16, C:0.10, G:0.34, T:0.40
Consensus pattern (16 bp):
TCAGGTTAATTCGGGT
Found at i:405 original size:31 final size:32
Alignment explanation
Indices: 354--459 Score: 169
Period size: 32 Copynumber: 3.3 Consensus size: 32
344 GGTTTGAGTT
* *
354 GGGTTCGGATTGGATTTGGGTCAGGTTAATTC
1 GGGTTCGGGTTGAATTTGGGTCAGGTTAATTC
386 GGGTTCGGGTT-AATTTGGGTCAGGTTAATTC
1 GGGTTCGGGTTGAATTTGGGTCAGGTTAATTC
**
417 GGGTTCATGTTGAATTTGGGTCAGGTTAATTC
1 GGGTTCGGGTTGAATTTGGGTCAGGTTAATTC
449 GGGTTCGGGTT
1 GGGTTCGGGTT
460 CTGTTTGGGT
Statistics
Matches: 67, Mismatches: 6, Indels: 2
0.89 0.08 0.03
Matches are distributed among these distances:
31 28 0.42
32 39 0.58
ACGTcount: A:0.15, C:0.09, G:0.37, T:0.39
Consensus pattern (32 bp):
GGGTTCGGGTTGAATTTGGGTCAGGTTAATTC
Found at i:628 original size:16 final size:16
Alignment explanation
Indices: 607--666 Score: 66
Period size: 16 Copynumber: 3.8 Consensus size: 16
597 TTTTCATAAA
607 TTTTCGGATTTGGGTT
1 TTTTCGGATTTGGGTT
* *
623 TTTTCGGATTTGAGCT
1 TTTTCGGATTTGGGTT
* * *
639 TTTTCGGGTTCGGATT
1 TTTTCGGATTTGGGTT
*
655 TTTTCGGGTTTG
1 TTTTCGGATTTG
667 AACTTTTTCG
Statistics
Matches: 36, Mismatches: 8, Indels: 0
0.82 0.18 0.00
Matches are distributed among these distances:
16 36 1.00
ACGTcount: A:0.07, C:0.10, G:0.30, T:0.53
Consensus pattern (16 bp):
TTTTCGGATTTGGGTT
Found at i:673 original size:16 final size:16
Alignment explanation
Indices: 622--680 Score: 73
Period size: 16 Copynumber: 3.7 Consensus size: 16
612 GGATTTGGGT
* *
622 TTTTTCGGATTTGAGC
1 TTTTTCGGGTTTGAAC
* * *
638 TTTTTCGGGTTCGGAT
1 TTTTTCGGGTTTGAAC
654 TTTTTCGGGTTTGAAC
1 TTTTTCGGGTTTGAAC
670 TTTTTCGGGTT
1 TTTTTCGGGTT
681 CAGGTTTTTT
Statistics
Matches: 35, Mismatches: 8, Indels: 0
0.81 0.19 0.00
Matches are distributed among these distances:
16 35 1.00
ACGTcount: A:0.08, C:0.12, G:0.27, T:0.53
Consensus pattern (16 bp):
TTTTTCGGGTTTGAAC
Found at i:689 original size:16 final size:16
Alignment explanation
Indices: 638--702 Score: 71
Period size: 16 Copynumber: 4.1 Consensus size: 16
628 GGATTTGAGC
638 TTTTTCGGGTTC-GGAT
1 TTTTTCGGGTTCAGG-T
* **
654 TTTTTCGGGTT-TGAAC
1 TTTTTCGGGTTCAG-GT
670 TTTTTCGGGTTCAGGT
1 TTTTTCGGGTTCAGGT
686 TTTTTCGGGTTCAGGT
1 TTTTTCGGGTTCAGGT
702 T
1 T
703 CAGACGAATT
Statistics
Matches: 41, Mismatches: 5, Indels: 6
0.79 0.10 0.12
Matches are distributed among these distances:
16 40 0.98
17 1 0.02
ACGTcount: A:0.08, C:0.12, G:0.29, T:0.51
Consensus pattern (16 bp):
TTTTTCGGGTTCAGGT
Found at i:694 original size:32 final size:31
Alignment explanation
Indices: 619--696 Score: 120
Period size: 32 Copynumber: 2.5 Consensus size: 31
609 TTCGGATTTG
* *
619 GGTTTTTTCGGATTTGAGCTTTTTCGGGTTC
1 GGTTTTTTCGGGTTTGAACTTTTTCGGGTTC
650 GGATTTTTTCGGGTTTGAACTTTTTCGGGTTC
1 GG-TTTTTTCGGGTTTGAACTTTTTCGGGTTC
682 AGGTTTTTTCGGGTT
1 -GGTTTTTTCGGGTT
697 CAGGTTCAGA
Statistics
Matches: 43, Mismatches: 2, Indels: 3
0.90 0.04 0.06
Matches are distributed among these distances:
31 2 0.05
32 39 0.91
33 2 0.05
ACGTcount: A:0.08, C:0.12, G:0.29, T:0.51
Consensus pattern (31 bp):
GGTTTTTTCGGGTTTGAACTTTTTCGGGTTC
Found at i:4899 original size:52 final size:52
Alignment explanation
Indices: 4839--4942 Score: 208
Period size: 52 Copynumber: 2.0 Consensus size: 52
4829 CGATTGGTGA
4839 AAAGTGCTATTGATATCAGGATATCATTCTAGTGCTATGCCAACCAGAAGGG
1 AAAGTGCTATTGATATCAGGATATCATTCTAGTGCTATGCCAACCAGAAGGG
4891 AAAGTGCTATTGATATCAGGATATCATTCTAGTGCTATGCCAACCAGAAGGG
1 AAAGTGCTATTGATATCAGGATATCATTCTAGTGCTATGCCAACCAGAAGGG
4943 GTCAATTTGC
Statistics
Matches: 52, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
52 52 1.00
ACGTcount: A:0.33, C:0.17, G:0.23, T:0.27
Consensus pattern (52 bp):
AAAGTGCTATTGATATCAGGATATCATTCTAGTGCTATGCCAACCAGAAGGG
Found at i:9079 original size:15 final size:15
Alignment explanation
Indices: 9059--9088 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
9049 TGCGCCTCTT
*
9059 TTTTAATTTATTTTA
1 TTTTAAATTATTTTA
9074 TTTTAAATTATTTTA
1 TTTTAAATTATTTTA
9089 AGAAGGAAAG
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.30, C:0.00, G:0.00, T:0.70
Consensus pattern (15 bp):
TTTTAAATTATTTTA
Found at i:19218 original size:2 final size:2
Alignment explanation
Indices: 19213--19239 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
19203 AGGAAAAAAT
19213 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
19240 TGCGGAGACC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:25794 original size:23 final size:23
Alignment explanation
Indices: 25759--25814 Score: 60
Period size: 23 Copynumber: 2.4 Consensus size: 23
25749 TGGTGGGCGG
* *
25759 TCGACCGCCTCCAAGCCTAGCGAC
1 TCGACCACTTCCAAGCCTAGCG-C
* *
25783 -CGACCACTTCCAAGTCTGGCGC
1 TCGACCACTTCCAAGCCTAGCGC
25805 TCGACCACTT
1 TCGACCACTT
25815 AAAACCATGA
Statistics
Matches: 27, Mismatches: 4, Indels: 3
0.79 0.12 0.09
Matches are distributed among these distances:
22 1 0.04
23 26 0.96
ACGTcount: A:0.20, C:0.43, G:0.20, T:0.18
Consensus pattern (23 bp):
TCGACCACTTCCAAGCCTAGCGC
Found at i:25836 original size:25 final size:25
Alignment explanation
Indices: 25800--25851 Score: 77
Period size: 25 Copynumber: 2.1 Consensus size: 25
25790 TTCCAAGTCT
*
25800 GGCGCTCGACCACTTAAAACCATGA
1 GGCGCTCGACCACTTAAAACCAGGA
* *
25825 GGCGCTCTACCACTTACAACCAGGA
1 GGCGCTCGACCACTTAAAACCAGGA
25850 GG
1 GG
25852 AGCCTGACCC
Statistics
Matches: 24, Mismatches: 3, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
25 24 1.00
ACGTcount: A:0.29, C:0.33, G:0.23, T:0.15
Consensus pattern (25 bp):
GGCGCTCGACCACTTAAAACCAGGA
Found at i:25997 original size:26 final size:26
Alignment explanation
Indices: 25932--25998 Score: 84
Period size: 27 Copynumber: 2.5 Consensus size: 26
25922 TATCGTACGA
25932 CCACACGTGACCTCCAACGGACACCT
1 CCACACGTGACCTCCAACGGACACCT
*
25958 CCAACACGTGACCTCCAGA-GTACGACC-
1 CC-ACACGTGACCTCCA-ACGGAC-ACCT
25985 CCACACGTGACCTC
1 CCACACGTGACCTC
25999 GCGCGTGCAA
Statistics
Matches: 37, Mismatches: 1, Indels: 6
0.84 0.02 0.14
Matches are distributed among these distances:
26 14 0.38
27 19 0.51
28 4 0.11
ACGTcount: A:0.27, C:0.45, G:0.16, T:0.12
Consensus pattern (26 bp):
CCACACGTGACCTCCAACGGACACCT
Found at i:27762 original size:15 final size:15
Alignment explanation
Indices: 27742--27770 Score: 58
Period size: 15 Copynumber: 1.9 Consensus size: 15
27732 TTCATTCTCC
27742 TCATCATTGTCTTCG
1 TCATCATTGTCTTCG
27757 TCATCATTGTCTTC
1 TCATCATTGTCTTC
27771 ATCTTGCAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.14, C:0.28, G:0.10, T:0.48
Consensus pattern (15 bp):
TCATCATTGTCTTCG
Found at i:39690 original size:15 final size:16
Alignment explanation
Indices: 39670--39708 Score: 53
Period size: 16 Copynumber: 2.5 Consensus size: 16
39660 CGCCTCATTT
*
39670 TTTACACTTT-TACTC
1 TTTACACTTTGCACTC
*
39685 TTTACACTTTGCACTT
1 TTTACACTTTGCACTC
39701 TTTACACT
1 TTTACACT
39709 GAGTCTCCCC
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
15 10 0.48
16 11 0.52
ACGTcount: A:0.21, C:0.26, G:0.03, T:0.51
Consensus pattern (16 bp):
TTTACACTTTGCACTC
Found at i:39706 original size:16 final size:15
Alignment explanation
Indices: 39668--39708 Score: 55
Period size: 15 Copynumber: 2.7 Consensus size: 15
39658 ACCGCCTCAT
*
39668 TTTTTACACTTTTAC
1 TTTTTACACTTTCAC
*
39683 TCTTTACACTTTGCAC
1 TTTTTACACTTT-CAC
39699 TTTTTACACT
1 TTTTTACACT
39709 GAGTCTCCCC
Statistics
Matches: 22, Mismatches: 3, Indels: 1
0.85 0.12 0.04
Matches are distributed among these distances:
15 11 0.50
16 11 0.50
ACGTcount: A:0.20, C:0.24, G:0.02, T:0.54
Consensus pattern (15 bp):
TTTTTACACTTTCAC
Found at i:40721 original size:19 final size:18
Alignment explanation
Indices: 40697--40732 Score: 63
Period size: 19 Copynumber: 1.9 Consensus size: 18
40687 ATATATTCTG
40697 TTTCTTCTTTTCTTTTTTT
1 TTTCTTCTTTT-TTTTTTT
40716 TTTCTTCTTTTTTTTTT
1 TTTCTTCTTTTTTTTTT
40733 CATAAAAGAA
Statistics
Matches: 17, Mismatches: 0, Indels: 1
0.94 0.00 0.06
Matches are distributed among these distances:
18 6 0.35
19 11 0.65
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (18 bp):
TTTCTTCTTTTTTTTTTT
Found at i:40723 original size:14 final size:14
Alignment explanation
Indices: 40706--40733 Score: 56
Period size: 14 Copynumber: 2.0 Consensus size: 14
40696 GTTTCTTCTT
40706 TTCTTTTTTTTTTC
1 TTCTTTTTTTTTTC
40720 TTCTTTTTTTTTTC
1 TTCTTTTTTTTTTC
40734 ATAAAAGAAA
Statistics
Matches: 14, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 14 1.00
ACGTcount: A:0.00, C:0.14, G:0.00, T:0.86
Consensus pattern (14 bp):
TTCTTTTTTTTTTC
Found at i:58837 original size:1 final size:1
Alignment explanation
Indices: 58831--58858 Score: 56
Period size: 1 Copynumber: 28.0 Consensus size: 1
58821 ATTTCATGGT
58831 AAAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAAA
58859 CCTACTTTTT
Statistics
Matches: 27, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 27 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:64471 original size:54 final size:53
Alignment explanation
Indices: 64396--64524 Score: 162
Period size: 47 Copynumber: 2.5 Consensus size: 53
64386 AACCTGTTAG
* * *
64396 TCTTTTCACTGCTTTTATTTGATCTTGGTCCTTGGAGTTAGTAAACTTTAGTTC
1 TCTTTTCACCGCTTTAATTTGATCTTGGT-CTTGGAGTCAGTAAACTTTAGTTC
64450 TCTTTTCACCGCTTTAATTTGA------TCTTGGAGTCAGTAAACTTTAGTTC
1 TCTTTTCACCGCTTTAATTTGATCTTGGTCTTGGAGTCAGTAAACTTTAGTTC
**
64497 TCTTTTTGCCGCTTTAATTTGATCTTGG
1 TCTTTTCACCGCTTTAATTTGATCTTGG
64525 AGTTTTTAAA
Statistics
Matches: 64, Mismatches: 5, Indels: 13
0.78 0.06 0.16
Matches are distributed among these distances:
47 43 0.67
48 1 0.02
54 20 0.31
ACGTcount: A:0.17, C:0.18, G:0.16, T:0.49
Consensus pattern (53 bp):
TCTTTTCACCGCTTTAATTTGATCTTGGTCTTGGAGTCAGTAAACTTTAGTTC
Found at i:64480 original size:47 final size:47
Alignment explanation
Indices: 64426--64548 Score: 201
Period size: 47 Copynumber: 2.6 Consensus size: 47
64416 GATCTTGGTC
64426 CTTGGAGTTAGTAAACTTTAGTTCTCTTTTCACCGCTTTAATTTGAT
1 CTTGGAGTTAGTAAACTTTAGTTCTCTTTTCACCGCTTTAATTTGAT
* **
64473 CTTGGAGTCAGTAAACTTTAGTTCTCTTTTTGCCGCTTTAATTTGAT
1 CTTGGAGTTAGTAAACTTTAGTTCTCTTTTCACCGCTTTAATTTGAT
**
64520 CTTGGAGTTTTTAAACTTTAGTTCTCTTT
1 CTTGGAGTTAGTAAACTTTAGTTCTCTTT
64549 ACTTACGGCT
Statistics
Matches: 70, Mismatches: 6, Indels: 0
0.92 0.08 0.00
Matches are distributed among these distances:
47 70 1.00
ACGTcount: A:0.20, C:0.16, G:0.15, T:0.49
Consensus pattern (47 bp):
CTTGGAGTTAGTAAACTTTAGTTCTCTTTTCACCGCTTTAATTTGAT
Found at i:67372 original size:44 final size:45
Alignment explanation
Indices: 67322--67414 Score: 179
Period size: 45 Copynumber: 2.1 Consensus size: 45
67312 CCATCGAGTT
67322 GATTCGACTC-GAATAATTCTCAACGATCTGATAACTCAAAATAG
1 GATTCGACTCTGAATAATTCTCAACGATCTGATAACTCAAAATAG
67366 GATTCGACTCTGAATAATTCTCAACGATCTGATAACTCAAAATAG
1 GATTCGACTCTGAATAATTCTCAACGATCTGATAACTCAAAATAG
67411 GATT
1 GATT
67415 ATTCGTAAAT
Statistics
Matches: 48, Mismatches: 0, Indels: 1
0.98 0.00 0.02
Matches are distributed among these distances:
44 10 0.21
45 38 0.79
ACGTcount: A:0.38, C:0.19, G:0.14, T:0.29
Consensus pattern (45 bp):
GATTCGACTCTGAATAATTCTCAACGATCTGATAACTCAAAATAG
Found at i:88906 original size:28 final size:28
Alignment explanation
Indices: 88866--88952 Score: 174
Period size: 28 Copynumber: 3.1 Consensus size: 28
88856 CATGCCCCTT
88866 TCTGTCCTCAATTTCATTATGTATATAA
1 TCTGTCCTCAATTTCATTATGTATATAA
88894 TCTGTCCTCAATTTCATTATGTATATAA
1 TCTGTCCTCAATTTCATTATGTATATAA
88922 TCTGTCCTCAATTTCATTATGTATATAA
1 TCTGTCCTCAATTTCATTATGTATATAA
88950 TCT
1 TCT
88953 ACTCATTTAC
Statistics
Matches: 59, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
28 59 1.00
ACGTcount: A:0.28, C:0.18, G:0.07, T:0.47
Consensus pattern (28 bp):
TCTGTCCTCAATTTCATTATGTATATAA
Found at i:97400 original size:19 final size:21
Alignment explanation
Indices: 97371--97412 Score: 61
Period size: 20 Copynumber: 2.1 Consensus size: 21
97361 ATAAACTATG
97371 AACTAAAATTG-AAATAATTA
1 AACTAAAATTGCAAATAATTA
*
97391 AACT-AAATTGCAAGTAATTA
1 AACTAAAATTGCAAATAATTA
97411 AA
1 AA
97413 GTAGAAGAAA
Statistics
Matches: 20, Mismatches: 1, Indels: 2
0.87 0.04 0.09
Matches are distributed among these distances:
19 6 0.30
20 14 0.70
ACGTcount: A:0.57, C:0.07, G:0.07, T:0.29
Consensus pattern (21 bp):
AACTAAAATTGCAAATAATTA
Found at i:98071 original size:60 final size:60
Alignment explanation
Indices: 98003--98125 Score: 237
Period size: 60 Copynumber: 2.0 Consensus size: 60
97993 ATGATATTGG
*
98003 GAATAAAAACACAATTATCAATTGAATTAATAAAACCCAAAGACATAAGAAGAAGAGAAA
1 GAATAAAAACACAATTATCAATTAAATTAATAAAACCCAAAGACATAAGAAGAAGAGAAA
98063 GAATAAAAACACAATTATCAATTAAATTAATAAAACCCAAAGACATAAGAAGAAGAGAAA
1 GAATAAAAACACAATTATCAATTAAATTAATAAAACCCAAAGACATAAGAAGAAGAGAAA
98123 GAA
1 GAA
98126 CCAATTTTCT
Statistics
Matches: 62, Mismatches: 1, Indels: 0
0.98 0.02 0.00
Matches are distributed among these distances:
60 62 1.00
ACGTcount: A:0.61, C:0.11, G:0.11, T:0.16
Consensus pattern (60 bp):
GAATAAAAACACAATTATCAATTAAATTAATAAAACCCAAAGACATAAGAAGAAGAGAAA
Found at i:100696 original size:60 final size:59
Alignment explanation
Indices: 100623--100781 Score: 201
Period size: 61 Copynumber: 2.6 Consensus size: 59
100613 CGTCAGACCT
100623 TTATTTGAGCATTTTCGATAACGTTAGGCCCTTATTTGGCCAAATTAAAAGATCGAGCCC
1 TTATTTGAGCATTTT-GATAACGTTAGGCCCTTATTTGGCCAAATTAAAAGATCGAGCCC
* ** * * *
100683 TTATTTGAGCATTTTTTGATAATGTTAAACCCTTATTTGGTCAAATTAAAAGATCGGGCGC
1 TTATTTGAGCA--TTTTGATAACGTTAGGCCCTTATTTGGCCAAATTAAAAGATCGAGCCC
* * *
100744 TTATTTAAGCATTTTGACAAACGTTAGGTCCTTATTTG
1 TTATTTGAGCATTTTGA-TAACGTTAGGCCCTTATTTG
100782 CGCATTTAGC
Statistics
Matches: 84, Mismatches: 12, Indels: 6
0.82 0.12 0.06
Matches are distributed among these distances:
59 6 0.07
60 26 0.31
61 48 0.57
62 4 0.05
ACGTcount: A:0.28, C:0.16, G:0.18, T:0.38
Consensus pattern (59 bp):
TTATTTGAGCATTTTGATAACGTTAGGCCCTTATTTGGCCAAATTAAAAGATCGAGCCC
Found at i:101063 original size:46 final size:49
Alignment explanation
Indices: 100969--101067 Score: 150
Period size: 46 Copynumber: 2.1 Consensus size: 49
100959 AGTCACTTTC
100969 ATTTCAATTTCAAAGCAAAATATATAGAAAATGCATCTAGAAGGGAAATT
1 ATTTCAATTTCAAAGC-AAATATATAGAAAATGCATCTAGAAGGGAAATT
* *
101019 ATTTCCATTTCAAAGC-AA-A-ATAGCAAATGCATCTAGAAGGGAAATT
1 ATTTCAATTTCAAAGCAAATATATAGAAAATGCATCTAGAAGGGAAATT
101065 ATT
1 ATT
101068 ATGTGAGAGT
Statistics
Matches: 47, Mismatches: 2, Indels: 4
0.89 0.04 0.08
Matches are distributed among these distances:
46 29 0.62
47 1 0.02
48 2 0.04
50 15 0.32
ACGTcount: A:0.45, C:0.12, G:0.14, T:0.28
Consensus pattern (49 bp):
ATTTCAATTTCAAAGCAAATATATAGAAAATGCATCTAGAAGGGAAATT
Done.