Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009125.1 Corchorus capsularis cultivar CVL-1 contig09146, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12761

Tables:   1   

This is table  1  of  1  ( 12 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
66--105
2
20.5
2
94
5
73
50
0
0
50
1.00
1106--1273
31
5.5
31
70
14
145
32
20
19
27
1.97
1110--1274
60
2.8
60
91
0
267
33
20
19
26
1.97
1141--1243
29
3.5
28
72
16
91
32
20
19
28
1.97
1301--1499
31
6.6
30
73
13
158
26
19
19
35
1.95
1333--1495
60
2.7
60
92
1
265
25
19
19
35
1.95
5378--5423
22
2.0
23
83
4
58
41
23
15
19
1.89
7263--7302
16
2.5
15
88
8
53
72
2
2
22
1.09
10262--10305
19
2.2
19
84
8
52
59
2
2
36
1.23
12255--12299
21
2.1
21
84
8
56
17
31
11
40
1.85
12483--12634
32
4.6
33
85
4
164
11
37
36
15
1.83
12692--12761
32
2.2
32
89
0
104
15
41
34
8
1.78

Tables:   1

The End!