Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009128.1 Corchorus capsularis cultivar CVL-1 contig09149, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52451

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
5456--5500
22
2.2
20
84
11
56
42
22
15
20
1.89
5419--5522
54
1.9
52
84
9
138
38
25
18
17
1.92
5468--5570
31
3.3
31
86
0
125
33
27
20
18
1.96
6366--6411
2
22.0
2
82
8
56
45
6
0
47
1.28
8402--8445
23
1.9
23
90
9
72
27
9
18
45
1.79
9873--10233
156
2.3
155
77
7
392
30
15
20
33
1.93
13460--13498
13
2.9
14
88
11
64
43
12
5
38
1.65
14518--14595
31
2.5
31
89
0
129
24
19
8
47
1.78
17560--17607
25
2.0
24
84
11
64
37
12
14
35
1.84
17916--17957
2
21.0
2
90
9
68
47
2
0
50
1.14
21356--21397
13
3.0
14
86
6
50
4
7
0
88
0.64
21356--21381
1
26.0
1
100
0
52
0
0
0
100
0.00
23184--24268
543
2.0
543
95
0
1945
35
14
19
30
1.92
26799--26958
73
2.2
73
84
3
196
40
18
8
33
1.80
27063--27104
12
3.6
12
83
6
50
61
4
23
9
1.45
30410--30441
11
2.9
11
90
0
55
37
0
18
43
1.51
30420--30457
19
2.1
18
90
5
58
44
2
21
31
1.66
31762--31792
6
5.3
6
96
3
55
35
0
12
51
1.40
33191--33246
15
3.7
15
92
0
94
41
23
26
8
1.84
36119--36158
11
3.7
11
86
3
55
40
2
20
37
1.66
42579--42655
32
2.4
32
93
2
129
20
25
25
27
1.99
42677--42754
30
2.6
30
79
2
86
46
14
24
15
1.83
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
42857--42888
11
2.9
11
95
0
55
0
59
9
31
1.29
46283--46594
86
3.7
85
78
16
353
44
6
15
33
1.71
46330--46577
78
3.1
76
74
19
234
45
6
15
32
1.70
46422--46594
87
1.9
89
84
9
228
45
5
15
32
1.70

Tables:   1

The End!