Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009134.1 Corchorus capsularis cultivar CVL-1 contig09155, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2012
ACGTcount: A:0.34, C:0.19, G:0.17, T:0.30

Warning! 1 characters in sequence are not A, C, G, or T


Found at i:44 original size:14 final size:15

Alignment explanation


    Indices: 27--55  Score: 51
    Period size: 15  Copynumber: 2.0  Consensus size: 15

         17 TTTAAGTTAA

                           
         27 TCAAAA-ATCAATTT
          1 TCAAAAGATCAATTT

                           
         41 TCAAAAGATCAATTT
          1 TCAAAAGATCAATTT

         56 GAATTCACAC


Statistics
Matches: 14,  Mismatches: 0, Indels: 1
        0.93            0.00        0.07

Matches are distributed among these distances:
  14    6  0.43
  15    8  0.57

ACGTcount: A:0.48, C:0.14, G:0.03, T:0.34


Consensus pattern (15 bp):   
TCAAAAGATCAATTT
Done.