genome.fa.s9135.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009135.1 Corchorus capsularis cultivar CVL-1 contig09156, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  85758

Tables:   1   

This is table  1  of  1  ( 28 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
1039--1080	20	2.1	20	86	0	57	14	23	19	42	1.87
4297--4322	2	13.0	2	100	0	52	50	0	0	50	1.00
9353--9390	20	2.0	20	89	5	60	5	15	13	65	1.43
10712--10753	20	2.1	20	100	0	84	14	9	35	40	1.78
10902--11494	299	2.0	297	95	1	1080	34	23	20	21	1.96
12066--12587	70	7.5	70	71	17	417	32	23	13	30	1.93
12273--12587	134	2.4	128	92	3	504	33	22	13	30	1.93
17789--17931	50	3.2	41	75	18	126	39	6	10	42	1.66
20796--20866	6	12.2	6	75	14	60	80	14	5	0	0.89
20789--20840	18	3.1	16	79	17	52	80	17	1	0	0.80
20795--20866	29	2.6	28	77	22	80	80	13	5	0	0.88
20787--20866	11	7.3	11	72	16	58	78	16	5	0	0.91
20875--20950	39	1.9	40	97	2	145	39	26	10	23	1.87
20991--21083	29	3.1	29	85	4	114	36	22	15	25	1.93
21162--21567	88	4.6	88	88	5	527	29	22	15	32	1.95
22883--23014	66	2.0	66	100	0	264	43	6	16	33	1.73
23119--23157	1	39.0	1	100	0	78	100	0	0	0	0.00
23218--23287	30	2.3	30	95	0	122	32	22	18	25	1.97
23297--23354	16	3.6	16	77	13	73	25	10	24	39	1.87
23281--23355	33	2.3	32	93	4	123	28	13	22	36	1.92
23955--24047	41	2.2	41	83	5	107	38	6	11	43	1.67
24962--24995	13	2.7	13	86	4	52	0	14	0	85	0.60
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
45564--45588	1	25.0	1	100	0	50	0	0	0	100	0.00
64251--64310	19	3.3	19	68	13	63	36	11	20	31	1.88
64201--64384	70	2.6	70	88	7	250	39	10	19	31	1.85
64201--64385	35	5.3	34	85	7	221	38	10	18	31	1.85
64365--64506	56	2.5	57	81	6	146	40	9	22	28	1.84
69309--69388	24	3.4	24	81	10	94	17	36	8	37	1.81

Tables:   1

The End!