Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009136.1 Corchorus capsularis cultivar CVL-1 contig09157, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  76790

Tables:   1   

This is table  1  of  1  ( 26 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
15625--16189
156
3.6
155
79
7
617
31
14
21
32
1.93
28643--28689
17
2.8
17
81
12
69
27
21
21
29
1.98
35995--36094
49
2.0
51
86
9
143
30
4
14
52
1.59
41481--41518
11
3.5
11
89
10
51
39
0
2
57
1.12
41696--41729
16
2.1
17
88
5
52
52
8
0
38
1.33
61476--61500
2
12.5
2
100
0
50
48
0
0
52
1.00
61697--61727
2
15.5
2
100
0
62
48
0
0
51
1.00
61380--61806
227
1.9
223
92
4
714
34
13
13
38
1.83
73558--73660
45
2.3
44
80
11
111
38
17
7
35
1.79
73580--73659
23
3.5
22
84
6
99
40
13
6
40
1.70
73664--73849
22
8.7
22
70
17
108
38
13
7
39
1.74
73603--73764
60
2.6
63
77
12
145
37
14
8
40
1.76
73888--74010
22
5.6
22
77
9
108
30
13
11
44
1.79
73864--74006
44
3.2
44
68
13
114
30
13
10
46
1.76
73974--74079
22
4.7
22
80
8
99
33
14
11
40
1.81
73864--74029
88
1.9
88
82
2
208
31
13
11
43
1.79
73952--74081
22
5.8
23
77
14
98
34
14
10
40
1.80
74148--74253
44
2.4
43
78
10
108
36
20
8
33
1.83
74148--74253
22
4.8
20
72
13
68
36
20
8
33
1.83
74288--74352
22
2.9
22
83
4
76
41
21
6
30
1.77
74295--74470
44
4.0
44
81
8
162
38
17
9
34
1.82
74343--74473
22
6.0
22
75
5
113
38
15
10
35
1.82
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
74524--74548
13
1.9
13
100
0
50
64
0
0
36
0.94
74549--74585
19
2.0
18
94
5
65
64
0
10
24
1.25
74704--74737
2
16.5
2
93
6
59
47
0
2
50
1.16
74768--74821
26
2.1
26
86
6
74
25
5
14
53
1.63

Tables:   1

The End!