Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009139.1 Corchorus capsularis cultivar CVL-1 contig09160, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  150253

Tables:   1   

This is table  1  of  1  ( 25 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1118--1544
218
2.0
218
100
0
854
31
14
16
37
1.89
4413--4999
293
2.0
293
100
0
1174
26
16
19
38
1.92
18242--18348
47
2.3
47
96
0
196
28
11
22
38
1.88
19970--20199
74
3.0
74
94
3
388
30
18
10
40
1.85
22702--22731
15
2.0
15
93
0
51
50
20
16
13
1.78
29161--29227
33
2.0
33
97
0
125
37
17
22
22
1.94
37105--37180
38
2.0
38
94
0
134
19
11
14
53
1.71
40409--40546
4
33.5
4
70
13
66
27
6
1
64
1.27
40410--40544
24
6.0
23
71
12
84
28
6
1
63
1.28
44157--44197
20
2.0
20
95
0
73
29
0
21
48
1.50
44481--44537
29
2.0
29
89
0
87
35
5
15
43
1.70
46374--46438
32
2.0
32
85
5
87
21
32
16
29
1.96
57942--58060
56
2.1
56
96
0
220
46
13
13
26
1.80
58020--58099
42
1.9
42
89
0
124
50
16
8
25
1.73
75197--75237
20
2.0
20
100
0
82
48
14
14
21
1.80
101845--101878
17
2.0
17
88
11
52
35
11
23
29
1.90
105852--105880
10
2.9
10
100
0
58
27
0
0
72
0.85
105933--106000
26
2.6
26
84
9
93
35
1
8
54
1.41
106009--106068
25
2.5
24
83
5
68
43
1
20
35
1.62
107912--107988
14
5.4
14
77
9
57
41
2
2
53
1.28
111147--111173
12
2.2
12
100
0
54
0
0
59
40
0.98
119758--119827
36
2.0
36
89
8
110
34
22
18
24
1.96
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
129528--129560
17
2.0
17
88
5
50
0
21
0
78
0.75
145850--146288
167
2.7
163
83
7
552
40
15
12
30
1.86
146731--146760
2
15.0
2
100
0
60
50
0
0
50
1.00

Tables:   1

The End!