Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01009140.1 Corchorus capsularis cultivar CVL-1 contig09161, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2798
ACGTcount: A:0.35, C:0.18, G:0.17, T:0.30


Found at i:2536 original size:27 final size:27

Alignment explanation


    Indices: 2506--2557  Score: 95
    Period size: 27  Copynumber: 1.9  Consensus size: 27

       2496 TTTAGCTGTA

                                       
       2506 ACTTGTTCATCAAAATTACGCTGATGG
          1 ACTTGTTCATCAAAATTACGCTGATGG

                        *            
       2533 ACTTGTTCATCAGAATTACGCTGAT
          1 ACTTGTTCATCAAAATTACGCTGAT

       2558 CTGGTGTAAT


Statistics
Matches: 24,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  27   24  1.00

ACGTcount: A:0.29, C:0.19, G:0.17, T:0.35


Consensus pattern (27 bp):   
ACTTGTTCATCAAAATTACGCTGATGG
Done.