Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009142.1 Corchorus capsularis cultivar CVL-1 contig09163, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  48156

Tables:   1   

This is table  1  of  1  ( 23 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4758--4798
21
2.0
21
95
0
73
31
12
21
34
1.91
5107--5339
122
1.9
117
91
4
376
28
17
19
34
1.95
11420--11462
22
2.0
22
85
0
59
23
16
11
48
1.78
18351--18380
14
2.1
14
100
0
60
13
16
20
50
1.78
18305--18440
72
1.9
72
100
0
272
30
13
13
41
1.84
19139--19177
2
20.0
2
94
5
71
48
0
0
51
1.00
20156--20207
26
2.0
27
84
3
70
59
5
1
32
1.32
21632--21666
11
3.2
11
87
0
52
2
2
14
80
0.95
22891--22943
25
2.1
25
100
0
106
35
3
11
49
1.57
23084--23275
97
2.0
95
96
2
357
34
11
9
44
1.74
25495--25534
19
2.2
19
91
8
66
67
0
0
32
0.91
26142--26182
16
2.6
16
88
7
57
56
2
0
41
1.13
26138--26185
15
2.8
18
76
23
59
54
4
0
41
1.20
27502--27546
23
2.0
23
95
0
81
44
4
6
44
1.50
27726--27855
68
1.9
68
89
6
201
46
14
14
23
1.82
30509--30567
30
2.0
30
96
0
109
45
15
6
32
1.72
33704--33741
18
2.1
19
85
14
53
23
10
15
50
1.75
38070--38107
18
2.1
19
90
5
60
23
10
18
47
1.79
38506--38531
11
2.4
11
100
0
52
92
0
7
0
0.39
38823--38867
21
2.1
22
87
4
65
57
4
35
2
1.31
41193--41295
32
3.2
32
88
1
143
35
12
22
29
1.91
43873--43909
11
3.5
11
82
17
51
59
0
27
13
1.35
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
43879--43909
7
4.4
7
100
0
62
58
0
29
12
1.35

Tables:   1

The End!