Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWWV01009147.1 Corchorus capsularis cultivar CVL-1 contig09168, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  39503

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1039--1082
17
2.7
15
80
16
52
75
2
4
18
1.09
1656--1680
13
1.9
13
100
0
50
36
0
16
48
1.46
1966--2045
35
2.3
35
82
0
97
18
8
23
48
1.76
2476--2582
30
3.6
30
85
0
124
41
16
28
13
1.86
2828--2882
15
3.7
15
76
9
58
21
30
21
25
1.98
3892--3980
26
3.5
25
80
10
101
21
10
11
57
1.62
3900--3980
25
3.2
25
87
1
99
22
8
11
58
1.60
13621--13678
29
2.0
29
100
0
116
24
20
13
41
1.89
14128--14184
29
2.0
29
93
3
98
43
14
21
21
1.87
15711--15761
21
2.4
21
90
6
77
33
17
21
27
1.96
19335--19476
72
2.0
72
83
2
178
23
26
17
32
1.97
20493--20543
21
2.4
21
93
6
86
29
19
23
27
1.98
22037--22067
2
15.5
2
100
0
62
51
48
0
0
1.00
24545--24617
26
2.8
26
79
4
85
52
4
27
16
1.62
25231--25300
30
2.3
30
85
4
88
27
10
12
50
1.72
37207--37324
60
2.0
59
94
1
209
31
16
16
35
1.91
39412--39454
2
21.5
2
100
0
86
51
0
0
48
1.00

Tables:   1

The End!