Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWWV01000915.1 Corchorus capsularis cultivar CVL-1 contig00915, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2454
ACGTcount: A:0.34, C:0.13, G:0.09, T:0.44


Found at i:1077 original size:13 final size:13

Alignment explanation


    Indices: 1041--1066  Score: 52
    Period size: 13  Copynumber: 2.0  Consensus size: 13

       1031 TTATACTACT

                         
       1041 GATAATTTAATAA
          1 GATAATTTAATAA

                         
       1054 GATAATTTAATAA
          1 GATAATTTAATAA

       1067 ATCATTTTAA


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   13  1.00

ACGTcount: A:0.54, C:0.00, G:0.08, T:0.38


Consensus pattern (13 bp):   
GATAATTTAATAA
Done.